Statistics and Breed-wide Allele Frequency - German Shepherd

Updated May 15, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=44)
1006	387 375 293 180	0.06
1045	376 371 277 186	0.02
1052	380 372 289 184	0.47
1054	382 379 277 184	0.06
1068	380 373 287 181	0.32
1091	381 371 277 181	0.01
1165	392 369 281 182	0.01
1166	388 379 277 184	0.06

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=44)
2002	343 327 280	0.01
2003	343 324 282	0.01
2007	351 327 280	0.06
2017	343 322 280	0.42
2022	339 327 282	0.11
2039	345 327 276	0.02
2053	343 324 280	0.31
2067	343 322 284	0.05
2080	339 325 276	0.01

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=44)
1	AHT121	80	0.02
		88	0.01
		94	0.06
		100	0.17
		102	0.60
		104	0.09
		106	0.01
		108	0.01
		112	0.02
2	AHT137	131	0.35
		133	0.03
		135	0.01
		137	0.55
		141	0.01
		147	0.01
		151	0.02
		155	0.01
3	AHTH130	123	0.11
		125	0.03
		127	0.39
		129	0.05
		131	0.42
4	AHTh171-A	219	0.10
		223	0.43
		225	0.02
		233	0.44
5	AHTh260	238	0.36
		242	0.26
		244	0.02
		246	0.18
		248	0.03
		252	0.14
6	AHTk211	87	0.25
		89	0.35
		91	0.13
		95	0.27
7	AHTk253	280	0.01
		286	0.08
		288	0.70
		290	0.07
		292	0.02
		294	0.11
8	C22.279	116	0.42
		118	0.13
		124	0.03
		126	0.42
9	FH2001	132	0.30
		140	0.01
		144	0.39
		148	0.28
		152	0.02
10	FH2054	152	0.40
		156	0.06
		160	0.06
		164	0.13
		168	0.33
		172	0.03
11	FH2848	232	0.03
		236	0.03
		238	0.03
		240	0.45
		242	0.41
		244	0.03
12	INRA21	91	0.08
		95	0.59
		97	0.03
		99	0.18
		101	0.11
13	INU005	110	0.18
		124	0.28
		126	0.51
		128	0.02
14	INU030	146	0.42
		150	0.53
		152	0.05
15	INU055	210	0.23
		214	0.07
		218	0.45
		220	0.25
16	LEI004	85	0.51
		95	0.43
		103	0.02
		107	0.03
17	REN105L03	227	0.42
		229	0.01
		231	0.20
		233	0.08
		235	0.09
		241	0.19
18	REN162C04	200	0.10
		204	0.08
		206	0.42
		208	0.05
		212	0.35
19	REN169D01	212	0.40
		216	0.56
		218	0.01
		220	0.03
20	REN169O18	158	0.07
		162	0.25
		164	0.16
		166	0.16
		168	0.33
		172	0.01
		178	0.02
21	REN247M23	268	0.16
		270	0.74
		272	0.01
		278	0.09
22	REN54P11	226	0.43
		232	0.05
		234	0.45
		236	0.01
		238	0.06
23	REN64E19	139	0.01
		143	0.03
		145	0.02
		147	0.07
		153	0.20
		155	0.66
24	VGL0760	12	0.13
		13	0.35
		14	0.01
		18.2	0.06
		19.2	0.02
		20	0.01
		20.2	0.11
		21.2	0.22
		22.2	0.08
		23.2	0.01
25	VGL0910	16.1	0.01
		17.1	0.27
		18.1	0.05
		19.1	0.35
		20.1	0.13
		21.1	0.15
		22.1	0.05
26	VGL1063	8	0.01
		9	0.02
		10	0.14
		11	0.03
		12	0.38
		13	0.32
		14	0.07
		18	0.01
		19	0.01
		20	0.01
27	VGL1165	14	0.01
		15	0.18
		16	0.06
		17	0.20
		18	0.01
		21	0.01
		22	0.07
		23	0.01
		25	0.02
		26	0.23
		27	0.11
		28	0.08
28	VGL1828	15	0.03
		16	0.02
		17	0.05
		19	0.88
		20	0.01
		22	0.01
29	VGL2009	9	0.02
		11	0.28
		13	0.18
		14	0.19
		15	0.31
		16	0.01
30	VGL2409	15	0.31
		16	0.24
		17	0.16
		18	0.19
		19	0.10
31	VGL2918	12	0.02
		13	0.13
		14	0.19
		15	0.18
		16.3	0.01
		18.3	0.02
		19.3	0.07
		20.3	0.03
		21.3	0.26
		22.3	0.08
32	VGL3008	10	0.03
		13	0.01
		15	0.65
		16	0.02
		17	0.05
		18	0.17
		19	0.06
		20	0.01
33	VGL3235	13	0.01
		14	0.44
		15	0.39
		16	0.14
		17	0.01
		19	0.01

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	44	6.061	3.146	0.634	0.641	0.011
	SE		0.371	0.200	0.023	0.022	0.013

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	44	5.000	2.223	0.529	0.512	-0.008
	SE		0.404	0.234	0.070	0.052	0.045

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	44	9	2.471	0.591	0.595	0.007
2	AHT137	44	8	2.360	0.568	0.576	0.014
3	AHTH130	44	5	2.922	0.727	0.658	-0.106
4	AHTh171-A	44	4	2.539	0.614	0.606	-0.012
5	AHTh260	44	6	3.939	0.750	0.746	-0.005
6	AHTk211	44	4	3.615	0.659	0.723	0.089
7	AHTk253	44	6	1.920	0.477	0.479	0.004
8	C22.279	44	4	2.700	0.545	0.630	0.134
9	FH2001	44	5	3.145	0.682	0.682	0.000
10	FH2054	44	6	3.448	0.773	0.710	-0.088
11	FH2848	44	6	2.641	0.727	0.621	-0.170
12	INRA21	44	5	2.484	0.636	0.597	-0.065
13	INU005	44	4	2.661	0.636	0.624	-0.019
14	INU030	44	3	2.155	0.523	0.536	0.025
15	INU055	44	4	3.073	0.659	0.675	0.023
16	LEI004	44	4	2.224	0.523	0.550	0.050
17	REN105L03	44	6	3.695	0.659	0.729	0.096
18	REN162C04	44	5	3.128	0.727	0.680	-0.069
19	REN169D01	44	4	2.130	0.455	0.530	0.143
20	REN169O18	44	7	4.405	0.818	0.773	-0.058
21	REN247M23	44	4	1.726	0.409	0.421	0.028
22	REN54P11	44	5	2.509	0.614	0.601	-0.020
23	REN64E19	44	6	2.072	0.455	0.517	0.121
24	VGL0760	44	10	4.768	0.750	0.790	0.051
25	VGL0910	44	7	4.163	0.659	0.760	0.133
26	VGL1063	44	10	3.741	0.727	0.733	0.007
27	VGL1165	44	12	6.464	0.864	0.845	-0.022
28	VGL1828	44	6	1.299	0.250	0.230	-0.085
29	VGL2009	44	6	4.067	0.659	0.754	0.126
30	VGL2409	44	5	4.461	0.795	0.776	-0.025
31	VGL2918	44	10	5.966	0.841	0.832	-0.010
32	VGL3008	44	8	2.194	0.500	0.544	0.081
33	VGL3235	44	6	2.742	0.636	0.635	-0.002

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	44	7	1.599	0.364	0.375	0.030
2	DLA I-4ACA	44	6	2.978	0.705	0.664	-0.061
3	DLA I-4BCT	44	5	2.911	0.705	0.657	-0.073
4	DLA1131	44	5	2.230	0.636	0.552	-0.154
5	5ACA	44	4	1.533	0.318	0.348	0.085
6	5ACT	44	4	2.776	0.705	0.640	-0.101
7	5BCA	44	4	1.535	0.273	0.348	0.217

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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