Statistics and Breed-wide Allele Frequency - Newfoundland

Updated May 16, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Newfoundland (n=139)
1016	382 371 277 178	0.327
1033	382 379 277 181	0.004
1040	380 371 277 186	0.277
1062	382 371 277 183	0.007
1068	380 373 287 181	0.104
1069	380 365 281 184	0.007
1087	380 371 277 178	0.004
1092	376 379 277 181	0.086
1094	395 375 277 176	0.018
1159	395 379 277 181	0.004
1160	386 369 289 176	0.004
1175	380 375 293 180	0.147
1284	388 371 277 181	0.004
1285	380 375 277 186	0.007

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Newfoundland (n=139)
2003	343 324 282	0.004
2007	351 327 280	0.147
2014	339 322 284	0.349
2016	339 323 284	0.004
2021	339 324 268	0.007
2039	345 327 276	0.284
2045	339 325 284	0.007
2048	339 331 282	0.090
2053	343 324 280	0.104
2060	343 323 284	0.004

Allele Frequencies

#	Locus Name	Allele	Newfoundland (n=139)
1	AHT121	96	0.813
		100	0.025
		102	0.029
		104	0.004
		108	0.112
		110	0.014
		112	0.004
2	AHT137	131	0.004
		133	0.061
		137	0.165
		141	0.097
		143	0.004
		145	0.004
		147	0.561
		151	0.104
3	AHTH130	117	0.007
		119	0.076
		121	0.853
		125	0.047
		129	0.014
		133	0.004
4	AHTh171-A	219	0.101
		221	0.014
		225	0.054
		227	0.568
		229	0.007
		231	0.205
		233	0.047
		241	0.004
5	AHTh260	234	0.317
		238	0.072
		242	0.018
		246	0.399
		248	0.007
		252	0.187
6	AHTk211	87	0.827
		89	0.112
		91	0.022
		93	0.029
		95	0.007
		97	0.004
7	AHTk253	286	0.173
		288	0.752
		290	0.058
		292	0.018
8	C22.279	116	0.072
		118	0.115
		120	0.083
		122	0.004
		124	0.353
		126	0.065
		130	0.309
9	FH2001	132	0.572
		136	0.273
		140	0.004
		144	0.018
		148	0.004
		152	0.129
10	FH2054	148	0.007
		152	0.741
		156	0.212
		160	0.029
		164	0.007
		168	0.004
11	FH2848	232	0.004
		234	0.032
		236	0.004
		238	0.910
		240	0.043
		242	0.007
12	INRA21	95	0.385
		97	0.399
		101	0.068
		105	0.147
13	INU005	106	0.036
		110	0.795
		124	0.076
		126	0.043
		128	0.025
		130	0.025
14	INU030	144	0.079
		146	0.112
		148	0.054
		150	0.716
		152	0.032
		154	0.004
		156	0.004
15	INU055	208	0.169
		210	0.245
		212	0.302
		216	0.284
16	LEI004	85	0.043
		95	0.378
		97	0.011
		107	0.201
		109	0.367
17	REN105L03	229	0.004
		231	0.194
		233	0.457
		235	0.227
		237	0.004
		241	0.115
18	REN162C04	202	0.219
		204	0.007
		206	0.306
		208	0.468
19	REN169D01	202	0.040
		212	0.306
		216	0.450
		218	0.011
		220	0.194
20	REN169O18	160	0.083
		162	0.615
		164	0.083
		166	0.004
		168	0.086
		170	0.129
21	REN247M23	268	0.655
		272	0.317
		274	0.014
		276	0.004
		278	0.011
22	REN54P11	222	0.004
		226	0.115
		228	0.004
		230	0.007
		232	0.522
		234	0.011
		236	0.284
		238	0.018
		244	0.036
23	REN64E19	145	0.651
		147	0.086
		149	0.108
		153	0.155
24	VGL0760	13	0.050
		19.2	0.158
		20.2	0.029
		21.2	0.050
		22.2	0.011
		23.2	0.442
		24.2	0.108
		25.2	0.126
		26.2	0.025
25	VGL0910	16.1	0.004
		17.1	0.489
		18.1	0.036
		19.1	0.151
		20.1	0.065
		21.1	0.043
		22.1	0.191
		23.1	0.022
26	VGL1063	13	0.241
		14	0.324
		15	0.270
		16	0.007
		17	0.007
		18	0.108
		19	0.036
		20	0.007
27	VGL1165	16	0.004
		17	0.007
		18	0.363
		19	0.007
		20	0.007
		21	0.475
		22	0.004
		25	0.011
		26	0.014
		27	0.018
		28	0.040
		29	0.050
28	VGL1828	16	0.194
		17	0.004
		19	0.745
		20	0.036
		21	0.011
		23	0.007
		24	0.004
29	VGL2009	9	0.133
		11	0.036
		13	0.741
		14	0.083
		16	0.007
30	VGL2409	13	0.050
		14	0.025
		15	0.119
		16	0.155
		17	0.022
		18	0.349
		19	0.277
		20	0.004
31	VGL2918	13	0.029
		14	0.097
		15	0.097
		16	0.122
		17	0.007
		17.3	0.065
		18.3	0.086
		19.3	0.115
		20.3	0.371
		21.3	0.011
32	VGL3008	14	0.022
		15	0.004
		17	0.054
		18	0.219
		19	0.162
		20	0.435
		21	0.101
		22	0.004
33	VGL3235	13	0.129
		14	0.223
		16	0.018
		17	0.011
		18	0.604
		19	0.014

Standard genetic assessment based on 33 autosomal STR loci

Newfoundland

		N	Na	Ne	Ho	He	F
	Mean	139	6.545	2.666	0.549	0.569	0.036
	SE		0.321	0.168	0.029	0.029	0.012

Standard genetic assessment based on 7 STRs in the DLA region

Newfoundland

		N	Na	Ne	Ho	He	F
	Mean	139	5.571	2.858	0.576	0.626	0.079
	SE		0.341	0.267	0.035	0.039	0.004

Standard genetic assessment for individual STR loci

Newfoundland

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	139	7	1.481	0.309	0.325	0.048
2	AHT137	139	8	2.730	0.540	0.634	0.148
3	AHTH130	139	6	1.361	0.281	0.265	-0.059
4	AHTh171-A	139	8	2.628	0.576	0.619	0.071
5	AHTh260	139	6	3.331	0.698	0.700	0.003
6	AHTk211	139	6	1.432	0.288	0.302	0.046
7	AHTk253	139	4	1.670	0.345	0.401	0.140
8	C22.279	139	7	4.009	0.741	0.751	0.013
9	FH2001	139	6	2.387	0.568	0.581	0.022
10	FH2054	139	6	1.680	0.417	0.405	-0.030
11	FH2848	139	6	1.203	0.180	0.169	-0.066
12	INRA21	139	4	2.994	0.698	0.666	-0.048
13	INU005	139	6	1.557	0.324	0.358	0.095
14	INU030	139	7	1.869	0.446	0.465	0.041
15	INU055	139	4	3.839	0.770	0.740	-0.041
16	LEI004	139	5	3.127	0.698	0.680	-0.026
17	REN105L03	139	6	3.215	0.583	0.689	0.154
18	REN162C04	139	4	2.775	0.626	0.640	0.021
19	REN169D01	139	5	2.984	0.734	0.665	-0.104
20	REN169O18	139	6	2.402	0.504	0.584	0.137
21	REN247M23	139	5	1.890	0.504	0.471	-0.070
22	REN54P11	139	9	2.718	0.583	0.632	0.078
23	REN64E19	139	4	2.142	0.504	0.533	0.055
24	VGL0760	139	9	3.922	0.727	0.745	0.025
25	VGL0910	139	8	3.265	0.633	0.694	0.087
26	VGL1063	139	8	4.020	0.712	0.751	0.052
27	VGL1165	139	12	2.760	0.590	0.638	0.075
28	VGL1828	139	7	1.684	0.360	0.406	0.115
29	VGL2009	139	5	1.739	0.367	0.425	0.137
30	VGL2409	139	8	4.164	0.784	0.760	-0.032
31	VGL2918	139	10	5.076	0.820	0.803	-0.021
32	VGL3008	139	8	3.606	0.669	0.723	0.074
33	VGL3235	139	6	2.313	0.547	0.568	0.037

Standard genetic assessment for 7 STRs in the DLA region

Newfoundland

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	139	6	2.374	0.525	0.579	0.093
2	DLA I-4ACA	139	6	2.313	0.525	0.568	0.075
3	DLA I-4BCT	139	5	1.735	0.396	0.424	0.066
4	DLA1131	139	7	3.950	0.676	0.747	0.094
5	5ACA	139	4	3.090	0.619	0.676	0.085
6	5ACT	139	6	3.035	0.619	0.670	0.077
7	5BCA	139	5	3.509	0.669	0.715	0.064

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Newfoundland

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Newfoundland

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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