Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated May 6, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=77)
1052	380 372 289 184	0.344
1068	380 373 287 181	0.481
1165	392 369 281 182	0.104
1166	388 379 277 184	0.052
1167	397 381 277 184	0.019

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=77)
2017	343 322 280	0.344
2022	339 327 282	0.052
2053	343 324 280	0.500
2080	339 325 276	0.104

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=106)
1	AHT121	88	0.014
		98	0.278
		102	0.519
		104	0.094
		108	0.085
		112	0.009
2	AHT137	131	0.132
		137	0.840
		139	0.019
		149	0.005
		153	0.005
3	AHTH130	123	0.160
		125	0.042
		127	0.712
		131	0.085
4	AHTh171-A	219	0.108
		223	0.363
		225	0.193
		233	0.335
5	AHTh260	238	0.217
		242	0.561
		244	0.005
		246	0.137
		248	0.005
		252	0.075
6	AHTk211	87	0.061
		89	0.363
		91	0.038
		93	0.005
		95	0.533
7	AHTk253	286	0.005
		288	0.816
		292	0.179
8	C22.279	116	0.646
		118	0.066
		126	0.288
9	FH2001	124	0.061
		132	0.042
		144	0.660
		148	0.236
10	FH2054	148	0.033
		152	0.495
		156	0.123
		164	0.042
		168	0.269
		176	0.038
11	FH2848	232	0.066
		234	0.028
		238	0.354
		240	0.410
		242	0.142
12	INRA21	91	0.005
		93	0.009
		95	0.203
		97	0.132
		99	0.274
		101	0.377
13	INU005	124	0.373
		126	0.575
		132	0.052
14	INU030	146	0.061
		148	0.061
		150	0.712
		152	0.165
15	INU055	210	0.642
		214	0.033
		218	0.226
		220	0.099
16	LEI004	85	0.623
		95	0.373
		107	0.005
17	REN105L03	227	0.094
		231	0.108
		233	0.085
		235	0.259
		241	0.453
18	REN162C04	200	0.363
		204	0.028
		206	0.415
		212	0.193
19	REN169D01	212	0.198
19	REN169D01	216	0.802
20	REN169O18	162	0.156
		164	0.085
		166	0.387
		168	0.302
		174	0.071
21	REN247M23	268	0.354
		270	0.094
		272	0.075
		274	0.014
		276	0.014
		278	0.448
22	REN54P11	226	0.575
		232	0.009
		234	0.406
		240	0.009
23	REN64E19	139	0.132
		147	0.024
		151	0.113
		153	0.099
		155	0.632
24	VGL0760	13	0.058
		18.2	0.143
		19.2	0.195
		20.2	0.039
		21.2	0.344
		22.2	0.188
		23.2	0.032
25	VGL0910	13	0.156
		17.1	0.123
		19.1	0.201
		20.1	0.364
		21.1	0.149
		22.1	0.006
26	VGL1063	9	0.006
		10	0.045
		12	0.792
		14	0.032
		15	0.071
		18	0.052
27	VGL1165	14	0.058
		15	0.169
		16	0.026
		17	0.026
		19	0.071
		22	0.240
		25	0.162
		28	0.188
		29	0.058
28	VGL1828	15	0.013
		16	0.006
		17	0.104
		19	0.857
		20	0.019
29	VGL2009	11	0.883
		12	0.039
		14	0.039
		15	0.039
30	VGL2409	15	0.617
		16	0.201
		17	0.110
		18	0.071
31	VGL2918	13	0.175
		14	0.331
		19.3	0.006
		20.3	0.188
		21.3	0.299
32	VGL3008	10	0.006
		14	0.013
		15	0.240
		16	0.110
		17	0.201
		18	0.182
		20	0.065
		21	0.182
33	VGL3235	14	0.578
		15	0.240
		16	0.162
		17	0.019

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	106	4.848	2.703	0.589	0.565	-0.035
	SE		0.254	0.204	0.031	0.029	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	106	3.571	2.100	0.421	0.474	0.082
	SE		0.341	0.235	0.045	0.064	0.033

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	106	6	2.754	0.708	0.637	-0.111
2	AHT137	106	5	1.383	0.236	0.277	0.149
3	AHTH130	106	4	1.845	0.509	0.458	-0.112
4	AHTh171-A	106	4	3.410	0.783	0.707	-0.108
5	AHTh260	106	6	2.587	0.632	0.613	-0.030
6	AHTk211	106	5	2.374	0.613	0.579	-0.060
7	AHTk253	106	3	1.433	0.311	0.302	-0.031
8	C22.279	106	3	1.981	0.557	0.495	-0.124
9	FH2001	106	4	2.011	0.575	0.503	-0.145
10	FH2054	106	6	2.968	0.679	0.663	-0.024
11	FH2848	106	5	3.137	0.726	0.681	-0.066
12	INRA21	106	6	3.624	0.717	0.724	0.010
13	INU005	106	3	2.115	0.604	0.527	-0.145
14	INU030	106	4	1.845	0.500	0.458	-0.092
15	INU055	106	4	2.111	0.538	0.526	-0.022
16	LEI004	106	3	1.899	0.528	0.473	-0.116
17	REN105L03	106	5	3.331	0.689	0.700	0.016
18	REN162C04	106	4	2.920	0.736	0.658	-0.119
19	REN169D01	106	2	1.466	0.340	0.318	-0.069
20	REN169O18	106	5	3.608	0.792	0.723	-0.096
21	REN247M23	106	6	2.933	0.679	0.659	-0.031
22	REN54P11	106	4	2.017	0.528	0.504	-0.048
23	REN64E19	106	5	2.272	0.519	0.560	0.073
24	VGL0760	106	7	4.582	0.831	0.782	-0.063
25	VGL0910	106	6	4.262	0.766	0.765	-0.001
26	VGL1063	106	6	1.566	0.338	0.361	0.066
27	VGL1165	106	9	6.199	0.805	0.839	0.040
28	VGL1828	106	5	1.340	0.221	0.254	0.131
29	VGL2009	106	4	1.275	0.195	0.216	0.096
30	VGL2409	106	4	2.281	0.545	0.562	0.029
31	VGL2918	106	5	3.772	0.766	0.735	-0.043
32	VGL3008	106	8	5.526	0.857	0.819	-0.047
33	VGL3235	106	4	2.390	0.610	0.582	-0.050

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	106	4	1.441	0.312	0.306	-0.018
2	DLA I-4ACA	106	5	2.753	0.545	0.637	0.143
3	DLA I-4BCT	106	4	2.738	0.532	0.635	0.161
4	DLA1131	106	3	2.413	0.494	0.586	0.157
5	5ACA	106	2	1.357	0.260	0.263	0.013
6	5ACT	106	4	2.618	0.519	0.618	0.160
7	5BCA	106	3	1.377	0.286	0.274	-0.043

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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