UC Davis Veterinary Genetics Laboratory

Canine Genetic Linkage Map

http://www.ackchf.org

animal picture

The canine linkage map is the principal tool for gaining unbiased genetic access to causal pathways underpinning diseases in the dog. Previously published maps have consisted of fewer than 500 markers. The linkage map presented here is comprehensive, and is based on pedigree resources with greater mapping power than the human CEPH.

Browse the Genome By Linkage (v1.3)

chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome 20 chromosome 21 chromosome 22 chromosome 23 chromosome 24 chromosome 25 chromosome 26 chromosome 27 chromosome 28 chromosome 29 chromosome 30 chromosome 31 chromosome 32 chromosome 33 chromosome 34 chromosome 35 chromosome 36 chromosome 37 chromosome 38
Karyotype image adapted from Ensembl

Map v1.3 Excel File

Previous Builds


January 2006 (v1.2)1795 Markers
January 2006 (CAP Grant)1795 Markers
December 2005 (v1.1)1417 Markers
June 2005 (v1.0)833 Markers
June 2005 (CAP Grant)833 Markers
January 2005 (PAG)702 Markers

Protocols


M13 Tailed Primer Protocol
PCR Conditions
Thermocycling Program
Post PCR

Linkage Map Statistics


Map BuildJune 2006 (v1.3)
Total Markers Mapped2364
Total Genetic Length3861 cM
Average spacing1.7 +/- 2.1 cM
Gaps <= 1 cM49%
Gaps > 4 cM10%
Total DNAs384
Total Avg Inf Meioses297

Marker Information

Primer3 Parameters

Product Size:100-400 bp
Primer Size (min)19
Primer Size (opt)20
Primer Size (max)22
Tm (min)59
Tm (opt)62
Tm (max)64

Linkage Map Markers

Markers in Tabular Form2768 Markers

Virtual Markers
Pre-designed markers spanning the genome
CA-Markers13985 Markers
CT-Markers10440 Markers