UC Davis Veterinary Genetics Laboratory
UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory

Canine Genetic Linkage Map

http://www.ackchf.org

The canine linkage map is the principal tool for gaining unbiased genetic access to causal pathways underpinning diseases in the dog. Previously published maps have consisted of fewer than 500 markers. The linkage map presented here is comprehensive, and is based on pedigree resources with greater mapping power than the human CEPH.

Browse the Genome By Linkage

chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome 20 chromosome 21 chromosome 22 chromosome 23 chromosome 24 chromosome 25 chromosome 26 chromosome 27 chromosome 28 chromosome 29 chromosome 30 chromosome 31 chromosome 32 chromosome 33 chromosome 34 chromosome 35 chromosome 36 chromosome 37 chromosome 38
Karyotype image adapted from Ensembl

Download: Linkage Map File [xls]

Previous Builds

Build PhaseDateMarkers
Phase 5July 20062488
Phase 4January 2006 v1.21795
January 2006 (CAP Grant)1795
Phase 3December 2005 (v1.1)1417
Phase 2June 2005 - v1.0833
June 2005 (CAP Grant)833
Phase 1January 2005 (PAG)702

Protocols

M13 Tailed Primer Protocol
PCR Conditions
Thermocycling Program
Post PCR

Linkage Map Statistics


Map BuildSeptember 2008 (Submitted)
Total Markers Mapped3075
Total Genetic Length2085 cM
Average spacing.7 +/- .9 cM
Gaps <= 1 cM74%
Gaps < 5 cM98%
Total DNAs281
Total Avg Inf Meioses201 +/- 91

Marker Information

Primer3 Parameters

Product Size:100-400 bp
Primer Size (min)19
Primer Size (opt)20
Primer Size (max)22
Tm (min)59
Tm (opt)62
Tm (max)64

Comprehensive Microsatellite Markers
For a comprehensive set of 32,135 mined microsatellite markers using the same design parameters as the linkage map loci, see DOGSET
 
Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL