UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Havanese

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Oct 16, 2017)
Havanese (n=314)
1AHT121 920.097
940.059
960.002
980.013
1000.059
1020.125
1040.508
1060.050
1080.088
2AHT137 1310.229
1330.067
1370.091
1390.030
1410.170
1430.134
1450.006
1470.175
1490.062
1510.032
1550.003
3AHTH130 1170.030
1190.244
1210.073
1230.030
1250.364
1270.195
1290.035
1310.027
4AHTh171-A 2190.166
2250.238
2270.037
2290.219
2310.257
2330.024
2350.046
2370.013
5AHTh260 2380.089
2420.010
2440.215
2460.336
2480.212
2500.096
2520.010
2540.029
2580.005
6AHTk211 870.486
890.228
910.134
950.139
970.014
7AHTk253 2840.003
2860.068
2880.635
2900.043
2920.250
8C22.279 1160.097
1180.219
1200.005
1220.014
1240.217
1260.118
1300.329
9FH2001 1240.045
1280.010
1320.450
1360.014
1400.010
1440.422
1480.032
1520.018
10FH2054 1480.022
1520.081
1560.240
1600.182
1640.091
1680.168
1720.104
1760.109
1800.002
1840.002
11FH2848 2300.022
2320.274
2340.048
2360.104
2380.064
2400.234
2420.247
2440.008
12INRA21 910.112
950.126
970.395
990.045
1010.165
1030.147
1050.011
13INU005 1100.042
1220.008
1240.573
1260.228
1280.011
1320.034
1380.104
14INU030 1440.620
1460.042
1480.029
1500.133
1520.166
1540.011
15INU055 2100.366
2120.198
2140.086
2160.176
2180.171
2220.003
16LEI004 830.002
850.609
930.002
950.264
970.003
1010.005
1050.002
1070.104
1090.011
17REN105L03 2270.008
2290.021
2310.225
2330.097
2350.003
2370.170
2390.024
2410.447
2450.005
18REN162C04 2000.054
2020.244
2040.045
2060.334
2080.133
2100.190
19REN169D01 2020.072
2100.170
2120.035
2140.037
2160.439
2180.065
2200.182
20REN169O18 1600.080
1620.237
1640.041
1660.174
1680.196
1700.236
1720.037
21REN247M23 2680.371
2700.148
2720.170
2740.013
2760.253
2780.045
22REN54P11 2220.184
2260.256
2280.110
2320.131
2340.058
2360.062
2380.200
23REN64E19 1390.161
1430.011
1450.110
1470.299
1490.016
1530.393
1550.010
24VGL0760 120.040
130.032
140.080
150.006
18.20.097
19.20.005
20.20.016
21.20.262
22.20.185
23.20.168
24.20.051
25.20.034
26.20.022
27.20.002
25VGL0910 130.008
140.010
16.10.086
170.011
17.10.117
180.019
18.10.062
19.10.126
20.10.054
20.30.003
21.10.334
220.034
22.10.102
230.029
23.10.005
26VGL1063 80.022
120.101
130.032
140.206
150.091
160.006
170.123
180.078
190.043
200.083
210.061
220.150
230.003
27VGL1165 140.002
150.002
160.002
170.021
180.088
190.027
200.018
210.121
220.002
230.056
250.002
260.315
270.070
280.211
290.005
300.008
310.034
320.008
330.011
28VGL1828 150.022
160.318
170.002
180.032
190.045
19.30.006
200.120
210.315
220.046
230.093
240.002
29VGL2009 90.005
100.002
110.120
120.026
130.264
140.267
150.243
160.073
170.002
30VGL2409 140.022
150.064
160.305
170.343
180.203
190.005
200.051
210.006
31VGL2918 120.061
130.280
140.129
150.085
160.011
16.30.008
17.30.019
18.30.081
19.30.029
20.30.018
21.30.075
22.30.198
23.30.006
32VGL3008 130.139
150.078
160.006
170.093
180.153
190.182
200.232
210.099
220.016
230.002
33VGL3235 110.010
120.019
130.117
140.225
150.395
160.043
170.037
180.078
190.073
200.003

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL