UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Havanese

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Dec 15, 2017)
Havanese (n=352)
1AHT121 920.100
940.054
960.001
980.014
1000.056
1020.127
1040.509
1060.054
1080.085
2AHT137 1310.232
1330.067
1370.094
1390.031
1410.169
1430.128
1450.007
1470.182
1490.060
1510.028
1550.003
3AHTH130 1170.031
1190.244
1210.068
1230.031
1250.369
1270.192
1290.037
1310.027
4AHTh171-A 2190.168
2250.235
2270.036
2290.225
2310.249
2330.023
2350.044
2370.020
5AHTh260 2380.095
2420.009
2440.220
2460.324
2480.223
2500.091
2520.009
2540.026
2580.004
6AHTk211 870.500
890.226
910.134
950.126
970.014
7AHTk253 2840.003
2860.071
2880.641
2900.040
2920.246
8C22.279 1160.094
1180.228
1200.004
1220.016
1240.215
1260.117
1300.326
9FH2001 1240.041
1280.010
1320.450
1360.016
1400.010
1440.423
1480.034
1520.016
10FH2054 1480.021
1520.078
1560.256
1600.182
1640.090
1680.165
1720.098
1760.105
1800.001
1840.001
11FH2848 2300.020
2320.277
2340.051
2360.095
2380.065
2400.239
2420.241
2440.009
2460.003
12INRA21 910.107
950.121
970.390
990.048
1010.165
1030.158
1050.010
13INU005 1100.046
1220.007
1240.561
1260.236
1280.011
1320.031
1380.107
14INU030 1440.630
1460.038
1480.031
1500.130
1520.157
1540.013
1560.001
15INU055 2100.369
2120.194
2140.088
2160.168
2180.178
2220.003
16LEI004 830.001
850.615
930.001
950.254
970.003
1010.004
1050.001
1070.110
1090.010
17REN105L03 2270.010
2290.018
2310.232
2330.095
2350.003
2370.165
2390.023
2410.449
2450.006
18REN162C04 2000.051
2020.241
2040.041
2060.349
2080.128
2100.189
19REN169D01 2020.074
2100.172
2120.034
2140.036
2160.435
2180.064
2200.186
20REN169O18 1600.082
1620.232
1640.038
1660.182
1680.192
1700.233
1720.041
21REN247M23 2680.375
2700.153
2720.170
2740.011
2760.247
2780.043
22REN54P11 2220.188
2260.255
2280.118
2320.127
2340.056
2360.060
2380.197
23REN64E19 1390.170
1430.010
1450.108
1470.291
1490.017
1530.389
1550.016
24VGL0760 120.044
130.033
140.080
150.006
18.20.095
19.20.006
20.20.017
21.20.252
22.20.182
23.20.177
24.20.051
25.20.030
26.20.026
27.20.001
25VGL0910 130.007
140.010
16.10.084
170.014
17.10.117
180.019
18.10.061
19.10.134
20.10.051
20.30.003
21.10.323
220.041
22.10.101
230.030
23.10.004
26VGL1063 80.021
120.103
130.037
140.209
150.091
160.007
170.121
180.080
190.040
200.080
210.056
220.150
230.006
27VGL1165 140.001
150.001
160.001
170.019
180.083
190.026
200.016
210.123
220.001
230.051
250.001
260.326
270.066
280.212
290.004
300.009
310.036
320.010
330.014
28VGL1828 150.021
160.316
170.001
180.033
190.043
19.30.007
200.110
210.319
220.047
230.101
240.001
29VGL2009 90.004
100.001
110.131
120.024
130.249
140.262
150.254
160.073
170.001
30VGL2409 140.021
150.061
160.309
170.348
180.202
190.004
200.048
210.006
31VGL2918 120.056
130.282
140.132
150.094
160.011
16.30.007
17.30.017
18.30.091
19.30.026
20.30.019
21.30.067
22.30.192
23.30.006
32VGL3008 130.138
150.083
160.007
170.095
180.150
190.185
200.225
210.100
220.016
230.001
33VGL3235 110.016
120.020
130.111
140.234
150.377
160.050
170.038
180.074
190.077
200.003

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL