UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Havanese

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Dec 15, 2018)
Havanese (n=393)
1AHT121 920.107
940.054
960.001
980.013
1000.055
1020.126
1040.505
1060.048
1080.091
2AHT137 1310.239
1330.065
1370.094
1390.033
1410.168
1430.120
1450.006
1470.187
1490.057
1510.028
1550.003
3AHTH130 1170.031
1190.254
1210.069
1230.028
1250.356
1270.202
1290.033
1310.028
4AHTh171-A 2190.167
2250.245
2270.034
2290.219
2310.247
2330.020
2350.041
2370.026
5AHTh260 2380.097
2420.009
2440.223
2460.321
2480.223
2500.092
2520.008
2540.025
2580.004
6AHTk211 870.504
890.219
910.131
950.131
970.015
7AHTk253 2840.004
2860.071
2880.646
2900.039
2920.239
8C22.279 1160.091
1180.228
1200.005
1220.015
1240.228
1260.116
1300.316
9FH2001 1240.037
1280.009
1320.464
1360.014
1400.010
1440.418
1480.033
1520.014
10FH2054 1480.023
1520.078
1560.259
1600.188
1640.087
1680.162
1720.101
1760.101
1800.001
1840.001
11FH2848 2300.019
2320.277
2340.048
2360.095
2380.064
2400.233
2420.252
2440.009
2460.003
12INRA21 910.106
950.111
970.397
990.050
1010.162
1030.165
1050.010
13INU005 1100.045
1220.006
1240.560
1260.237
1280.010
1320.031
1340.003
1380.108
14INU030 1440.636
1460.036
1480.029
1500.125
1520.159
1540.013
1560.001
15INU055 2100.360
2120.195
2140.101
2160.168
2180.173
2220.003
16LEI004 830.001
850.622
930.001
950.253
970.003
1010.004
1050.001
1070.106
1090.009
17REN105L03 2270.009
2290.022
2310.216
2330.087
2350.003
2370.174
2390.020
2410.463
2450.006
18REN162C04 2000.052
2020.240
2040.042
2060.351
2080.129
2100.186
19REN169D01 2020.075
2100.168
2120.038
2140.039
2160.435
2180.060
2200.184
20REN169O18 1600.075
1620.235
1640.043
1660.183
1680.188
1700.234
1720.041
21REN247M23 2680.380
2700.148
2720.179
2740.010
2760.240
2780.042
22REN54P11 2220.181
2260.260
2280.122
2320.121
2340.054
2360.063
2380.199
23REN64E19 1390.161
1430.009
1450.107
1470.293
1490.017
1510.001
1530.398
1550.014
24VGL0760 120.041
130.031
140.088
150.005
18.20.101
19.20.005
20.20.019
21.20.253
22.20.179
23.20.168
24.20.055
25.20.028
26.20.027
27.20.001
25VGL0910 130.006
140.011
16.10.083
170.013
17.10.112
180.019
18.10.056
19.10.136
20.10.046
20.30.004
21.10.329
220.040
22.10.106
230.031
23.10.008
26VGL1063 80.027
120.106
130.040
140.204
150.094
160.006
170.115
180.077
190.043
200.073
210.056
220.154
230.005
27VGL1165 140.001
150.001
160.003
170.023
180.088
190.026
200.015
210.117
220.001
230.048
250.001
260.319
270.065
280.219
290.004
300.008
310.034
320.009
330.017
28VGL1828 150.020
160.324
170.001
180.034
190.042
19.30.006
200.103
210.315
220.047
230.105
240.001
29VGL2009 90.004
100.001
110.138
120.023
130.255
140.253
150.253
160.073
170.001
30VGL2409 140.019
150.061
160.319
170.351
180.195
190.004
200.045
210.006
31VGL2918 120.054
130.286
140.136
150.091
160.010
16.30.006
17.30.018
18.30.089
19.30.024
20.30.017
21.30.069
22.30.195
23.30.005
32VGL3008 130.133
150.079
160.009
170.096
180.152
190.191
200.222
210.102
220.015
230.001
33VGL3235 110.014
120.020
130.103
140.242
150.376
160.045
170.034
180.074
190.085
200.005

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