UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Havanese

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Sep 13, 2018)
Havanese (n=388)
1AHT121 920.105
940.053
960.001
980.013
1000.056
1020.123
1040.509
1060.049
1080.092
2AHT137 1310.238
1330.064
1370.095
1390.034
1410.168
1430.117
1450.006
1470.188
1490.058
1510.028
1550.003
3AHTH130 1170.031
1190.255
1210.067
1230.028
1250.357
1270.200
1290.034
1310.028
4AHTh171-A 2190.167
2250.242
2270.035
2290.221
2310.248
2330.021
2350.041
2370.026
5AHTh260 2380.097
2420.009
2440.220
2460.323
2480.222
2500.091
2520.008
2540.026
2580.004
6AHTk211 870.505
890.219
910.131
950.130
970.014
7AHTk253 2840.003
2860.071
2880.647
2900.039
2920.241
8C22.279 1160.090
1180.230
1200.005
1220.016
1240.225
1260.116
1300.318
9FH2001 1240.037
1280.009
1320.463
1360.014
1400.009
1440.420
1480.034
1520.014
10FH2054 1480.023
1520.078
1560.260
1600.189
1640.087
1680.161
1720.099
1760.101
1800.001
1840.001
11FH2848 2300.019
2320.274
2340.049
2360.095
2380.064
2400.232
2420.254
2440.009
2460.003
12INRA21 910.105
950.112
970.398
990.050
1010.163
1030.161
1050.010
13INU005 1100.045
1220.006
1240.563
1260.234
1280.010
1320.031
1340.003
1380.107
14INU030 1440.634
1460.036
1480.030
1500.125
1520.160
1540.013
1560.001
15INU055 2100.358
2120.195
2140.099
2160.169
2180.176
2220.003
16LEI004 830.001
850.624
930.001
950.249
970.003
1010.004
1050.001
1070.107
1090.009
17REN105L03 2270.009
2290.022
2310.218
2330.086
2350.003
2370.174
2390.021
2410.461
2450.006
18REN162C04 2000.053
2020.239
2040.043
2060.350
2080.128
2100.187
19REN169D01 2020.076
2100.169
2120.037
2140.040
2160.433
2180.061
2200.184
20REN169O18 1600.075
1620.236
1640.043
1660.180
1680.191
1700.236
1720.040
21REN247M23 2680.383
2700.147
2720.180
2740.010
2760.238
2780.041
22REN54P11 2220.180
2260.260
2280.123
2320.123
2340.053
2360.063
2380.199
23REN64E19 1390.163
1430.009
1450.106
1470.292
1490.017
1530.399
1550.014
24VGL0760 120.041
130.030
140.089
150.005
18.20.099
19.20.005
20.20.018
21.20.253
22.20.177
23.20.171
24.20.054
25.20.028
26.20.027
27.20.001
25VGL0910 130.006
140.012
16.10.084
170.013
17.10.112
180.019
18.10.057
19.10.137
20.10.047
20.30.004
21.10.326
220.040
22.10.105
230.031
23.10.008
26VGL1063 80.026
120.106
130.039
140.204
150.094
160.006
170.115
180.076
190.044
200.074
210.056
220.155
230.005
27VGL1165 140.001
150.001
160.003
170.022
180.087
190.026
200.016
210.118
220.001
230.049
250.001
260.318
270.066
280.221
290.004
300.008
310.034
320.009
330.017
28VGL1828 150.021
160.322
170.001
180.035
190.043
19.30.006
200.105
210.314
220.048
230.105
240.001
29VGL2009 90.004
100.001
110.137
120.023
130.256
140.253
150.253
160.071
170.001
30VGL2409 140.019
150.061
160.317
170.351
180.196
190.004
200.045
210.006
31VGL2918 120.054
130.287
140.134
150.092
160.010
16.30.006
17.30.017
18.30.089
19.30.025
20.30.017
21.30.068
22.30.195
23.30.005
32VGL3008 130.133
150.079
160.009
170.094
180.152
190.191
200.224
210.102
220.014
230.001
33VGL3235 110.014
120.021
130.102
140.243
150.376
160.045
170.035
180.075
190.084
200.005

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL