UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Magyar Agar

DLA class I and II haplotypes identified to date in Magyar Agar

DLA Class I Haplotype Frequencies (Updated Dec 15, 2017)
Magyar Agar (n=26)
1003387 375 277 1860.15
1015380 373 291 1860.08
1033382 379 277 1810.15
1052380 372 289 1840.06
1054382 379 277 1840.12
1066376 375 277 1780.12
1104386 373 289 1860.12
1161380 379 277 1860.02
1162386 373 289 1810.06
1163389 381 277 1830.08
1164391 379 281 1810.06
DLA Class II Haplotype Frequencies (Updated Dec 15, 2017)
Magyar Agar (n=26)
2001343 324 2840.17
2006339 325 2800.21
2012345 322 2800.13
2016339 323 2840.08
2017343 322 2800.29
2047339 331 2800.12

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Dec 15, 2017)
Magyar Agar (n=26)
1AHT121 940.06
960.08
980.04
1000.10
1020.06
1040.52
1060.12
1180.04
2AHT137 1310.48
1370.17
1410.08
1450.19
1530.08
3AHTH130 1190.12
1250.10
1270.44
1290.25
1310.02
1350.04
1370.04
4AHTh171-A 2190.17
2250.10
2270.02
2290.35
2310.04
2330.04
2350.21
2370.08
5AHTh260 2360.04
2400.21
2440.06
2460.31
2480.02
2500.13
2520.19
2540.04
6AHTk211 890.42
910.44
930.04
950.10
7AHTk253 2840.04
2860.02
2880.33
2900.60
2920.02
8C22.279 1180.46
1200.04
1240.23
1260.25
1300.02
9FH2001 1320.02
1360.12
1400.02
1440.79
1480.06
10FH2054 1440.06
1520.10
1560.23
1600.29
1680.10
1720.21
1760.02
11FH2848 2280.02
2300.10
2320.06
2360.38
2380.19
2400.13
2420.08
2440.04
12INRA21 950.38
970.17
990.38
1010.04
1050.02
13INU005 1240.23
1260.35
1280.17
1300.06
1320.19
14INU030 1440.29
1500.69
1520.02
15INU055 2080.17
2100.23
2120.27
2140.17
2180.15
16LEI004 850.10
950.31
970.06
1050.23
1070.27
1110.04
17REN105L03 2270.17
2310.02
2330.21
2350.54
2390.06
18REN162C04 1980.08
2000.02
2020.48
2040.08
2060.35
19REN169D01 2080.02
2120.25
2160.54
2200.19
20REN169O18 1580.10
1600.12
1620.40
1640.19
1680.17
1700.02
21REN247M23 2660.25
2680.40
2700.08
2720.23
2780.04
22REN54P11 2220.02
2260.15
2280.13
2320.06
2340.04
2360.19
2380.40
23REN64E19 1390.06
1410.02
1450.50
1470.38
1490.02
1510.02
24VGL0760 120.06
18.20.48
20.20.37
22.20.06
23.20.02
24.20.02
25VGL0910 130.12
14.10.06
16.10.17
170.02
17.10.06
180.35
18.10.06
19.10.17
26VGL1063 80.10
90.10
110.10
120.06
130.23
140.08
150.25
160.10
27VGL1165 180.02
190.08
200.04
210.10
250.17
260.12
280.40
290.02
300.02
320.04
28VGL1828 160.12
170.12
190.06
200.54
220.15
230.02
29VGL2009 90.38
130.15
140.40
160.06
30VGL2409 130.42
150.08
160.04
170.25
180.15
190.04
200.02
31VGL2918 120.04
130.42
140.10
150.06
18.30.02
21.30.19
22.30.17
32VGL3008 140.04
150.08
160.10
170.54
180.13
190.04
200.02
210.06
33VGL3235 120.10
130.25
140.29
150.04
160.29
170.04

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL