UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for ISSA Shiloh Shepherd

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies.

#Locus NameAlleleAllele Frequency (Oct 16, 2017)
Shiloh Shepherd, ISSA (n=104)
1AHT121 880.005
980.125
1020.678
1040.106
1080.087
2AHT137 1310.163
1370.827
1390.010
3AHTH130 1230.192
1250.024
1270.678
1310.106
4AHTh171-A 230.005
2190.101
2230.375
2250.192
2330.327
5AHTh260 2380.058
2420.793
2460.082
2520.067
6AHTk211 870.144
890.264
910.048
950.543
7AHTk253 2880.870
2920.130
8C22.279 120.005
1160.707
1180.010
1240.038
1260.240
9FH2001 140.005
1240.115
1320.264
1440.428
1480.188
10FH2054 1480.063
1520.178
1560.308
1600.048
1640.058
1680.293
1760.053
11FH2848 2380.442
2400.457
2420.096
2440.005
12INRA21 930.005
950.101
970.038
990.260
1010.596
13INU005 1100.019
1240.346
1260.635
14INU030 1460.091
1480.077
1500.587
1520.245
15INU055 2100.505
2140.034
2180.423
2200.038
16LEI004 850.596
950.404
17REN105L03 2270.043
2310.154
2330.077
2350.260
2410.466
18REN162C04 2000.125
2040.029
2060.558
2080.024
2120.264
19REN169D01 2120.221
2140.005
2160.774
20REN169O18 1620.365
1640.139
1660.240
1680.255
21REN247M23 2680.361
2700.087
2720.149
2780.404
22REN54P11 2260.591
2340.409
23REN64E19 1390.111
1510.216
1530.111
1550.563
24VGL0760 120.034
130.043
150.010
18.20.024
19.20.303
20.20.178
21.20.139
22.20.240
23.20.029
25VGL0910 130.005
17.10.173
19.10.058
20.10.457
21.10.308
26VGL1063 100.135
120.774
140.091
27VGL1165 140.005
150.139
160.058
170.139
190.014
220.130
250.313
260.038
280.163
28VGL1828 170.019
190.981
29VGL2009 100.010
110.798
120.043
130.005
140.144
30VGL2409 150.630
160.192
170.058
180.120
31VGL2918 130.053
140.178
19.30.154
20.30.197
21.30.385
22.30.034
32VGL3008 100.005
140.053
150.226
160.115
170.226
180.048
200.111
210.212
220.005
33VGL3235 140.553
150.159
160.288

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL