UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for ISSA Shiloh Shepherd

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies.

#Locus NameAlleleAllele Frequency (Apr 27, 2018)
Shiloh Shepherd, ISSA (n=127)
1AHT121 880.004
980.134
1020.669
1040.114
1080.079
2AHT137 1310.173
1370.815
1390.012
3AHTH130 1230.185
1250.020
1270.661
1310.134
4AHTh171-A 2190.110
2230.346
2250.185
2330.358
5AHTh260 2380.063
2420.768
2460.094
2520.075
6AHTk211 870.134
890.256
910.051
950.559
7AHTk253 2880.874
2920.126
8C22.279 1160.720
1180.012
1240.039
1260.228
9FH2001 1240.126
1320.224
1440.449
1480.201
10FH2054 1480.051
1520.157
1560.311
1600.047
1640.055
1680.299
1760.079
11FH2848 2380.433
2400.469
2420.094
2440.004
12INRA21 930.008
950.094
970.035
990.268
1010.594
13INU005 1100.024
1240.339
1260.638
14INU030 1460.091
1480.071
1500.571
1520.268
15INU055 2100.531
2140.031
2180.406
2200.031
16LEI004 850.598
950.402
17REN105L03 2270.039
2310.165
2330.079
2350.264
2410.453
18REN162C04 2000.130
2040.024
2060.575
2080.020
2120.252
19REN169D01 2120.224
2140.004
2160.772
20REN169O18 1620.370
1640.114
1660.236
1680.280
21REN247M23 2680.362
2700.083
2720.165
2780.390
22REN54P11 2260.567
2340.433
23REN64E19 1390.118
1510.224
1530.126
1550.531
24VGL0760 120.031
130.039
150.008
18.20.028
19.20.272
20.20.169
21.20.173
22.20.240
23.20.039
25VGL0910 130.004
17.10.161
19.10.098
20.10.437
21.10.295
22.10.004
26VGL1063 100.138
120.756
140.106
27VGL1165 140.004
150.161
160.063
170.134
190.012
220.134
250.291
260.031
280.169
28VGL1828 170.020
190.980
29VGL2009 100.008
110.803
120.043
130.004
140.142
30VGL2409 150.614
160.193
170.051
180.142
31VGL2918 130.047
140.161
19.30.157
20.30.205
21.30.402
22.30.028
32VGL3008 100.004
140.047
150.224
160.106
170.205
180.063
200.106
210.236
220.008
33VGL3235 140.531
150.165
160.303

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL