UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for ISSA Shiloh Shepherd

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies.

#Locus NameAlleleAllele Frequency (Dec 15, 2017)
Shiloh Shepherd, ISSA (n=114)
1AHT121 880.004
980.123
1020.671
1040.114
1080.088
2AHT137 1310.175
1370.816
1390.009
3AHTH130 1230.184
1250.022
1270.675
1310.118
4AHTh171-A 2190.101
2230.368
2250.197
2330.333
5AHTh260 2380.070
2420.785
2460.079
2520.066
6AHTk211 870.140
890.263
910.057
950.539
7AHTk253 2880.873
2920.127
8C22.279 1160.693
1180.013
1240.044
1260.250
9FH2001 1240.118
1320.250
1440.443
1480.189
10FH2054 1480.057
1520.167
1560.311
1600.044
1640.057
1680.303
1760.061
11FH2848 2380.456
2400.443
2420.096
2440.004
12INRA21 930.009
950.105
970.035
990.241
1010.610
13INU005 1100.018
1240.346
1260.636
14INU030 1460.088
1480.075
1500.605
1520.232
15INU055 2100.513
2140.031
2180.421
2200.035
16LEI004 850.588
950.412
17REN105L03 2270.039
2310.149
2330.088
2350.259
2410.465
18REN162C04 2000.127
2040.026
2060.561
2080.022
2120.263
19REN169D01 2120.237
2140.004
2160.759
20REN169O18 1620.360
1640.127
1660.250
1680.263
21REN247M23 2680.360
2700.088
2720.162
2780.390
22REN54P11 2260.579
2340.421
23REN64E19 1390.114
1510.224
1530.123
1550.539
24VGL0760 120.035
130.044
150.009
18.20.022
19.20.289
20.20.175
21.20.149
22.20.250
23.20.026
25VGL0910 130.004
17.10.167
19.10.053
20.10.465
21.10.311
26VGL1063 100.132
120.785
140.083
27VGL1165 140.004
150.145
160.053
170.136
190.013
220.140
250.316
260.035
280.158
28VGL1828 170.022
190.978
29VGL2009 100.009
110.807
120.048
130.004
140.132
30VGL2409 150.636
160.180
170.057
180.127
31VGL2918 130.053
140.171
19.30.154
20.30.206
21.30.386
22.30.031
32VGL3008 100.004
140.048
150.211
160.114
170.219
180.057
200.114
210.224
220.009
33VGL3235 140.544
150.167
160.289

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL