Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Apr 18, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Swedish Vallhund (n=556)
1006	387 375 293 180	0.2356
1009	382 377 277 184	0.0558
1068	380 373 287 181	0.3579
1177	395 373 277 181	0.1727
1178	386 365 277 186	0.1610
1179	395 375 293 180	0.0027
1259	387 373 287 181	0.0144

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Swedish Vallhund (n=556)
2007	351 327 280	0.2383
2022	339 327 282	0.0558
2053	343 324 280	0.5333
2066	339 324 280	0.0009
2084	339 323 268	0.1718

Allele Frequencies

#	Locus Name	Allele	Swedish Vallhund (n=557)
1	AHT121	94	0.1230
		96	0.3025
		98	0.0718
		100	0.4291
		102	0.0691
		106	0.0045
2	AHT137	131	0.3259
		133	0.0206
		135	0.1230
		137	0.5260
		139	0.0018
		147	0.0027
3	AHTH130	119	0.1293
		121	0.0853
		127	0.0619
		129	0.0135
		131	0.0009
		133	0.0018
		135	0.7074
4	AHTh171-A	221	0.6571
		225	0.1526
		227	0.0287
		229	0.0575
		233	0.1041
5	AHTh260	246	0.5323
		248	0.3043
		250	0.0036
		254	0.1598
6	AHTk211	87	0.4192
		89	0.1293
		91	0.4515
7	AHTk253	282	0.1957
		286	0.0646
		288	0.3618
		290	0.0987
		292	0.1867
		294	0.0925
8	C22.279	116	0.3151
		118	0.0018
		124	0.6293
		130	0.0539
9	FH2001	132	0.2433
		140	0.0063
		144	0.6140
		148	0.0727
		152	0.0637
10	FH2054	148	0.1355
		152	0.1302
		156	0.6364
		160	0.0449
		164	0.0036
		172	0.0485
		176	0.0009
11	FH2848	232	0.1598
		236	0.0350
		238	0.1122
		240	0.6786
		244	0.0144
12	INRA21	95	0.0377
		97	0.2370
		99	0.0557
		101	0.6697
13	INU005	122	0.0476
		124	0.8995
		126	0.0530
14	INU030	144	0.2056
		148	0.0449
		150	0.6975
		152	0.0521
15	INU055	210	0.2765
		212	0.0961
		214	0.3528
		216	0.2747
16	LEI004	85	0.1346
		95	0.5314
		97	0.0575
		105	0.1526
		107	0.1239
17	REN105L03	231	0.1284
		233	0.2002
		235	0.1670
		239	0.0961
		241	0.4084
18	REN162C04	200	0.2343
		202	0.2783
		204	0.2101
		206	0.2738
		210	0.0036
19	REN169D01	202	0.2531
		210	0.1041
		216	0.1526
		218	0.4901
20	REN169O18	162	0.6499
		170	0.3456
		174	0.0045
21	REN247M23	268	0.8671
21	REN247M23	272	0.1329
22	REN54P11	226	0.8959
		234	0.0871
		244	0.0171
23	REN64E19	145	0.0772
		147	0.4470
		149	0.4740
		153	0.0018
24	VGL0760	12	0.0727
		14	0.1050
		15	0.0036
		20.2	0.2953
		21.2	0.2944
		22.2	0.0072
		23.2	0.0521
		24.2	0.1697
25	VGL0910	18.1	0.0018
		19.1	0.1391
		20.1	0.4551
		21.1	0.3483
		22.1	0.0539
		23.1	0.0018
26	VGL1063	8	0.0197
		12	0.1212
		13	0.1724
		14	0.0925
		15	0.4551
		16	0.0099
		19	0.0305
		20	0.0727
		21	0.0260
27	VGL1165	18	0.0153
		20	0.4408
		22	0.0009
		23	0.2729
		24	0.0278
		25	0.1490
		26	0.0934
28	VGL1828	15	0.0009
		16	0.0485
		17	0.2361
		18	0.0009
		19	0.6113
		20	0.1023
29	VGL2009	13	0.1221
		14	0.0180
		15	0.6616
		16	0.1939
		17	0.0045
30	VGL2409	14	0.2513
		15	0.0018
		16	0.4470
		17	0.2971
		18	0.0018
		19	0.0009
31	VGL2918	13	0.2056
		14	0.6697
		15	0.0395
		17.3	0.0009
		18.3	0.0458
		19.3	0.0359
		20.3	0.0027
32	VGL3008	16	0.2504
		17	0.4937
		18	0.1831
		19	0.0126
		20	0.0601
33	VGL3235	14	0.6005
		15	0.0853
		16	0.0081
		17	0.0126
		18	0.2935

Standard genetic assessment based on 33 autosomal STR loci

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	557	5.091	2.589	0.564	0.569	0.010
	SE		0.269	0.147	0.026	0.026	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	557	3.571	2.674	0.622	0.602	-0.034
	SE		0.275	0.248	0.042	0.040	0.008

Standard genetic assessment for individual STR loci

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	557	6	3.325	0.664	0.699	0.050
2	AHT137	557	6	2.510	0.560	0.602	0.069
3	AHTH130	557	7	1.893	0.501	0.472	-0.062
4	AHTh171-A	557	5	2.128	0.537	0.530	-0.013
5	AHTh260	557	4	2.491	0.600	0.598	-0.002
6	AHTk211	557	3	2.523	0.616	0.604	-0.020
7	AHTk253	557	6	4.415	0.799	0.773	-0.033
8	C22.279	557	4	2.007	0.478	0.502	0.048
9	FH2001	557	5	2.244	0.544	0.554	0.019
10	FH2054	557	7	2.248	0.598	0.555	-0.077
11	FH2848	557	5	2.000	0.497	0.500	0.005
12	INRA21	557	4	1.964	0.492	0.491	-0.002
13	INU005	557	3	1.228	0.172	0.186	0.073
14	INU030	557	4	1.875	0.472	0.467	-0.012
15	INU055	557	4	3.502	0.695	0.714	0.027
16	LEI004	557	5	2.920	0.621	0.658	0.055
17	REN105L03	557	5	3.839	0.770	0.740	-0.041
18	REN162C04	557	5	3.977	0.716	0.749	0.043
19	REN169D01	557	4	2.955	0.636	0.662	0.039
20	REN169O18	557	3	1.846	0.440	0.458	0.040
21	REN247M23	557	2	1.299	0.230	0.230	0.003
22	REN54P11	557	3	1.234	0.183	0.190	0.034
23	REN64E19	557	4	2.323	0.589	0.570	-0.034
24	VGL0760	557	8	4.509	0.772	0.778	0.008
25	VGL0910	557	6	2.851	0.625	0.649	0.038
26	VGL1063	557	9	3.739	0.740	0.733	-0.010
27	VGL1165	557	7	3.326	0.722	0.699	-0.032
28	VGL1828	557	6	2.261	0.546	0.558	0.021
29	VGL2009	557	5	2.039	0.522	0.509	-0.025
30	VGL2409	557	6	2.846	0.636	0.649	0.020
31	VGL2918	557	7	2.018	0.497	0.504	0.014
32	VGL3008	557	5	2.909	0.664	0.656	-0.012
33	VGL3235	557	5	2.201	0.494	0.546	0.095

Standard genetic assessment for 7 STRs in the DLA region

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	557	5	3.993	0.786	0.750	-0.049
2	DLA I-4ACA	557	4	2.608	0.619	0.617	-0.004
3	DLA I-4BCT	557	3	2.881	0.698	0.653	-0.070
4	DLA1131	557	4	2.608	0.619	0.617	-0.004
5	5ACA	557	3	2.543	0.625	0.607	-0.030
6	5ACT	557	3	2.493	0.616	0.599	-0.028
7	5BCA	557	3	1.590	0.390	0.371	-0.049

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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