Updated May 12, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Labrador Retriever (n=303) |
---|---|---|
1003 | 387 375 277 186 | 0.002 |
1006 | 387 375 293 180 | 0.028 |
1008 | 386 373 289 182 | 0.096 |
1016 | 382 371 277 178 | 0.015 |
1017 | 386 373 289 178 | 0.038 |
1030 | 380 373 293 178 | 0.046 |
1033 | 382 379 277 181 | 0.002 |
1034 | 382 379 277 182 | 0.003 |
1045 | 376 371 277 186 | 0.005 |
1046 | 376 379 291 180 | 0.002 |
1054 | 382 379 277 184 | 0.058 |
1062 | 382 371 277 183 | 0.012 |
1063 | 382 373 289 182 | 0.002 |
1065 | 380 371 277 181 | 0.378 |
1066 | 376 375 277 178 | 0.003 |
1068 | 380 373 287 181 | 0.031 |
1070 | 380 375 291 178 | 0.003 |
1087 | 380 371 277 178 | 0.002 |
1105 | 382 379 277 178 | 0.087 |
1134 | 384 365 291 178 | 0.013 |
1142 | 376 379 277 180 | 0.002 |
1165 | 392 369 281 182 | 0.163 |
1175 | 380 375 293 180 | 0.002 |
1176 | 382 373 289 178 | 0.002 |
1180 | 386 371 277 181 | 0.002 |
1189 | 382 379 289 182 | 0.002 |
1226 | 380 373 277 181 | 0.002 |
1243 | 387 375 277 180 | 0.002 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Labrador Retriever (n=303) |
---|---|---|
2001 | 343 324 284 | 0.002 |
2003 | 343 324 282 | 0.021 |
2005 | 339 322 280 | 0.056 |
2007 | 351 327 280 | 0.031 |
2008 | 339 327 276 | 0.002 |
2014 | 339 322 284 | 0.002 |
2021 | 339 324 268 | 0.012 |
2022 | 339 327 282 | 0.058 |
2023 | 341 323 282 | 0.046 |
2024 | 343 323 280 | 0.084 |
2031 | 339 322 282 | 0.012 |
2032 | 339 323 280 | 0.002 |
2039 | 345 327 276 | 0.005 |
2046 | 339 329 280 | 0.007 |
2048 | 339 331 282 | 0.370 |
2049 | 339 331 284 | 0.002 |
2052 | 345 321 280 | 0.079 |
2053 | 343 324 280 | 0.030 |
2080 | 339 325 276 | 0.167 |
2081 | 343 322 282 | 0.002 |
2083 | 339 324 282 | 0.002 |
2098 | 343 323 282 | 0.002 |
2127 | 339 331 276 | 0.007 |
2135 | 339 321 280 | 0.003 |
Allele Frequencies
# | Locus Name | Allele | Labrador Retriever (n=305) |
---|---|---|---|
1 | AHT121 | 94 | 0.016 |
96 | 0.043 | ||
98 | 0.023 | ||
102 | 0.582 | ||
104 | 0.054 | ||
106 | 0.259 | ||
108 | 0.016 | ||
110 | 0.005 | ||
112 | 0.002 | ||
2 | AHT137 | 131 | 0.105 |
133 | 0.234 | ||
137 | 0.026 | ||
139 | 0.025 | ||
141 | 0.174 | ||
143 | 0.002 | ||
145 | 0.002 | ||
147 | 0.051 | ||
149 | 0.323 | ||
151 | 0.002 | ||
153 | 0.057 | ||
3 | AHTH130 | 119 | 0.087 |
121 | 0.187 | ||
123 | 0.105 | ||
125 | 0.070 | ||
127 | 0.266 | ||
129 | 0.270 | ||
133 | 0.015 | ||
4 | AHTh171-A | 219 | 0.018 |
223 | 0.346 | ||
225 | 0.162 | ||
227 | 0.243 | ||
229 | 0.002 | ||
233 | 0.051 | ||
235 | 0.138 | ||
237 | 0.041 | ||
5 | AHTh260 | 238 | 0.051 |
240 | 0.116 | ||
242 | 0.003 | ||
244 | 0.144 | ||
246 | 0.402 | ||
248 | 0.111 | ||
250 | 0.020 | ||
252 | 0.048 | ||
254 | 0.102 | ||
256 | 0.003 | ||
6 | AHTk211 | 87 | 0.061 |
89 | 0.021 | ||
91 | 0.180 | ||
93 | 0.008 | ||
95 | 0.410 | ||
97 | 0.320 | ||
7 | AHTk253 | 284 | 0.218 |
286 | 0.064 | ||
288 | 0.441 | ||
290 | 0.190 | ||
292 | 0.087 | ||
8 | C22.279 | 114 | 0.002 |
116 | 0.218 | ||
118 | 0.107 | ||
120 | 0.007 | ||
124 | 0.323 | ||
126 | 0.041 | ||
130 | 0.303 | ||
9 | FH2001 | 132 | 0.074 |
136 | 0.011 | ||
140 | 0.023 | ||
144 | 0.126 | ||
148 | 0.652 | ||
152 | 0.016 | ||
158 | 0.095 | ||
162 | 0.002 | ||
10 | FH2054 | 148 | 0.089 |
152 | 0.259 | ||
156 | 0.420 | ||
160 | 0.041 | ||
164 | 0.030 | ||
168 | 0.136 | ||
172 | 0.025 | ||
176 | 0.002 | ||
11 | FH2848 | 232 | 0.374 |
236 | 0.002 | ||
238 | 0.215 | ||
240 | 0.157 | ||
242 | 0.010 | ||
244 | 0.243 | ||
12 | INRA21 | 91 | 0.007 |
95 | 0.313 | ||
97 | 0.105 | ||
99 | 0.007 | ||
101 | 0.533 | ||
103 | 0.036 | ||
13 | INU005 | 106 | 0.002 |
110 | 0.049 | ||
120 | 0.003 | ||
124 | 0.469 | ||
126 | 0.441 | ||
128 | 0.002 | ||
132 | 0.034 | ||
14 | INU030 | 144 | 0.541 |
146 | 0.013 | ||
150 | 0.297 | ||
152 | 0.146 | ||
154 | 0.003 | ||
15 | INU055 | 208 | 0.082 |
210 | 0.116 | ||
212 | 0.279 | ||
214 | 0.002 | ||
216 | 0.034 | ||
218 | 0.367 | ||
220 | 0.120 | ||
16 | LEI004 | 85 | 0.415 |
95 | 0.264 | ||
97 | 0.005 | ||
101 | 0.025 | ||
105 | 0.005 | ||
107 | 0.284 | ||
111 | 0.003 | ||
17 | REN105L03 | 229 | 0.002 |
231 | 0.070 | ||
233 | 0.093 | ||
235 | 0.631 | ||
237 | 0.110 | ||
241 | 0.048 | ||
245 | 0.039 | ||
249 | 0.007 | ||
18 | REN162C04 | 200 | 0.169 |
202 | 0.416 | ||
204 | 0.062 | ||
206 | 0.262 | ||
208 | 0.036 | ||
210 | 0.052 | ||
212 | 0.002 | ||
19 | REN169D01 | 192 | 0.005 |
202 | 0.193 | ||
210 | 0.051 | ||
212 | 0.241 | ||
214 | 0.323 | ||
216 | 0.151 | ||
218 | 0.010 | ||
220 | 0.003 | ||
224 | 0.023 | ||
20 | REN169O18 | 158 | 0.002 |
160 | 0.002 | ||
162 | 0.082 | ||
164 | 0.125 | ||
166 | 0.052 | ||
168 | 0.495 | ||
170 | 0.243 | ||
21 | REN247M23 | 268 | 0.659 |
270 | 0.015 | ||
272 | 0.303 | ||
276 | 0.020 | ||
278 | 0.003 | ||
22 | REN54P11 | 222 | 0.103 |
226 | 0.359 | ||
228 | 0.002 | ||
230 | 0.002 | ||
232 | 0.338 | ||
234 | 0.059 | ||
236 | 0.049 | ||
238 | 0.056 | ||
244 | 0.033 | ||
23 | REN64E19 | 139 | 0.080 |
143 | 0.002 | ||
145 | 0.152 | ||
147 | 0.161 | ||
149 | 0.252 | ||
153 | 0.351 | ||
155 | 0.002 | ||
24 | VGL0760 | 18.2 | 0.026 |
19.2 | 0.090 | ||
20.2 | 0.249 | ||
21.2 | 0.477 | ||
22.2 | 0.087 | ||
23.2 | 0.067 | ||
24.2 | 0.003 | ||
25 | VGL0910 | 15.1 | 0.003 |
16.1 | 0.085 | ||
17.1 | 0.289 | ||
18.1 | 0.095 | ||
19.1 | 0.143 | ||
20.1 | 0.249 | ||
21.1 | 0.125 | ||
22.1 | 0.011 | ||
26 | VGL1063 | 8 | 0.041 |
13 | 0.143 | ||
14 | 0.264 | ||
15 | 0.067 | ||
16 | 0.002 | ||
17 | 0.172 | ||
18 | 0.149 | ||
19 | 0.148 | ||
20 | 0.013 | ||
21 | 0.002 | ||
27 | VGL1165 | 16 | 0.002 |
17 | 0.002 | ||
18 | 0.002 | ||
19 | 0.002 | ||
20 | 0.087 | ||
21 | 0.379 | ||
22 | 0.016 | ||
25 | 0.010 | ||
26 | 0.062 | ||
27 | 0.248 | ||
28 | 0.187 | ||
29 | 0.003 | ||
32 | 0.002 | ||
28 | VGL1828 | 14 | 0.003 |
15 | 0.098 | ||
16 | 0.231 | ||
17 | 0.102 | ||
18 | 0.028 | ||
19 | 0.364 | ||
20 | 0.066 | ||
21 | 0.005 | ||
22 | 0.103 | ||
29 | VGL2009 | 10 | 0.005 |
11 | 0.231 | ||
12 | 0.049 | ||
13 | 0.398 | ||
14 | 0.208 | ||
15 | 0.100 | ||
16 | 0.008 | ||
30 | VGL2409 | 13 | 0.170 |
14 | 0.126 | ||
15 | 0.031 | ||
16 | 0.061 | ||
17 | 0.464 | ||
18 | 0.148 | ||
31 | VGL2918 | 11 | 0.002 |
12 | 0.408 | ||
13 | 0.100 | ||
14 | 0.097 | ||
15 | 0.031 | ||
16 | 0.005 | ||
17.3 | 0.011 | ||
18.3 | 0.146 | ||
19.3 | 0.190 | ||
20.3 | 0.007 | ||
22.3 | 0.003 | ||
32 | VGL3008 | 14 | 0.087 |
15 | 0.166 | ||
16 | 0.007 | ||
17 | 0.105 | ||
18 | 0.130 | ||
19 | 0.274 | ||
20 | 0.090 | ||
21 | 0.138 | ||
22 | 0.005 | ||
33 | VGL3235 | 12 | 0.069 |
13 | 0.015 | ||
14 | 0.090 | ||
15 | 0.246 | ||
16 | 0.502 | ||
17 | 0.030 | ||
18 | 0.041 | ||
19 | 0.008 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 305 | 7.788 | 3.698 | 0.657 | 0.708 | 0.071 | |
SE | 0.314 | 0.174 | 0.015 | 0.015 | 0.011 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 305 | 6.429 | 3.214 | 0.688 | 0.666 | -0.030 | |
SE | 0.445 | 0.316 | 0.041 | 0.035 | 0.009 |
Standard genetic assessment for individual STR loci
Labrador Retriever
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 305 | 9 | 2.429 | 0.597 | 0.588 | -0.014 |
2 | AHT137 | 305 | 11 | 4.816 | 0.708 | 0.792 | 0.106 |
3 | AHTH130 | 305 | 7 | 4.942 | 0.757 | 0.798 | 0.050 |
4 | AHTh171-A | 305 | 8 | 4.378 | 0.652 | 0.772 | 0.154 |
5 | AHTh260 | 305 | 10 | 4.471 | 0.741 | 0.776 | 0.046 |
6 | AHTk211 | 305 | 6 | 3.259 | 0.528 | 0.693 | 0.238 |
7 | AHTk253 | 305 | 5 | 3.451 | 0.643 | 0.710 | 0.095 |
8 | C22.279 | 305 | 7 | 3.893 | 0.734 | 0.743 | 0.012 |
9 | FH2001 | 305 | 8 | 2.188 | 0.505 | 0.543 | 0.070 |
10 | FH2054 | 305 | 8 | 3.667 | 0.633 | 0.727 | 0.130 |
11 | FH2848 | 305 | 6 | 3.710 | 0.728 | 0.730 | 0.004 |
12 | INRA21 | 305 | 6 | 2.536 | 0.649 | 0.606 | -0.072 |
13 | INU005 | 305 | 7 | 2.393 | 0.528 | 0.582 | 0.093 |
14 | INU030 | 305 | 5 | 2.486 | 0.554 | 0.598 | 0.073 |
15 | INU055 | 305 | 7 | 4.028 | 0.639 | 0.752 | 0.149 |
16 | LEI004 | 305 | 7 | 3.098 | 0.603 | 0.677 | 0.109 |
17 | REN105L03 | 305 | 8 | 2.337 | 0.538 | 0.572 | 0.060 |
18 | REN162C04 | 305 | 7 | 3.589 | 0.603 | 0.721 | 0.164 |
19 | REN169D01 | 305 | 9 | 4.429 | 0.754 | 0.774 | 0.026 |
20 | REN169O18 | 305 | 7 | 3.040 | 0.610 | 0.671 | 0.091 |
21 | REN247M23 | 305 | 5 | 1.898 | 0.443 | 0.473 | 0.064 |
22 | REN54P11 | 305 | 9 | 3.792 | 0.679 | 0.736 | 0.078 |
23 | REN64E19 | 305 | 7 | 4.127 | 0.685 | 0.758 | 0.096 |
24 | VGL0760 | 305 | 7 | 3.220 | 0.715 | 0.689 | -0.037 |
25 | VGL0910 | 305 | 8 | 5.059 | 0.767 | 0.802 | 0.044 |
26 | VGL1063 | 305 | 10 | 5.881 | 0.741 | 0.830 | 0.107 |
27 | VGL1165 | 305 | 13 | 3.977 | 0.643 | 0.749 | 0.142 |
28 | VGL1828 | 305 | 9 | 4.511 | 0.787 | 0.778 | -0.011 |
29 | VGL2009 | 305 | 7 | 3.732 | 0.659 | 0.732 | 0.100 |
30 | VGL2409 | 305 | 6 | 3.489 | 0.662 | 0.713 | 0.072 |
31 | VGL2918 | 305 | 11 | 4.088 | 0.702 | 0.755 | 0.071 |
32 | VGL3008 | 305 | 9 | 6.066 | 0.813 | 0.835 | 0.026 |
33 | VGL3235 | 305 | 8 | 3.051 | 0.666 | 0.672 | 0.010 |
Standard genetic assessment for 7 STRs in the DLA region
Labrador Retriever
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 305 | 8 | 3.429 | 0.734 | 0.708 | -0.037 |
2 | DLA I-4ACA | 305 | 6 | 3.709 | 0.770 | 0.730 | -0.055 |
3 | DLA I-4BCT | 305 | 6 | 2.608 | 0.620 | 0.617 | -0.005 |
4 | DLA1131 | 305 | 7 | 3.459 | 0.751 | 0.711 | -0.056 |
5 | 5ACA | 305 | 5 | 1.939 | 0.482 | 0.484 | 0.005 |
6 | 5ACT | 305 | 8 | 4.708 | 0.823 | 0.788 | -0.045 |
7 | 5BCA | 305 | 5 | 2.644 | 0.633 | 0.622 | -0.018 |