Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated May 15, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=169)
1007	380 372 281 182	0.003
1054	382 379 277 184	0.355
1081	395 379 289 178	0.006
1091	381 371 277 181	0.222
1109	381 379 291 186	0.030
1133	378 365 287 172	0.006
1160	386 369 289 176	0.012
1191	388 373 260 186	0.234
1192	376 373 281 182	0.018
1193	382 383 277 184	0.003
1194	385 369 291 178	0.009
1195	388 373 289 181	0.021
1196	390 372 291 180	0.015
1197	390 373 289 186	0.015
1198	392 371 277 184	0.050
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=169)
2001	343 324 284	0.015
2006	339 325 280	0.003
2015	339 327 280	0.050
2018	339 324 284	0.228
2032	339 323 280	0.006
2067	343 322 284	0.213
2071	339 322 286	0.003
2083	339 324 282	0.006
2097	343 327 276	0.009
2098	343 323 282	0.012
2105	341 325 276	0.015
2106	341 325 286	0.361
2107	343 322 286	0.003
2108	343 324 294	0.021
2109	345 322 276	0.030
2110	347 325 268	0.006
2111	351 324 276	0.018
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=169)
1	AHT121	90	0.003
		92	0.068
		96	0.003
		100	0.254
		102	0.243
		104	0.426
		106	0.003
2	AHT137	131	0.121
		133	0.201
		135	0.003
		137	0.021
		141	0.095
		145	0.101
		149	0.124
		151	0.104
		153	0.231
3	AHTH130	111	0.012
		115	0.003
		119	0.006
		121	0.831
		125	0.012
		129	0.003
		131	0.009
		133	0.038
		135	0.086
4	AHTh171-A	219	0.828
		221	0.003
		225	0.012
		227	0.136
		229	0.006
		233	0.015
5	AHTh260	236	0.104
		242	0.033
		244	0.559
		246	0.166
		248	0.062
		252	0.077
6	AHTk211	87	0.260
		89	0.183
		91	0.349
		93	0.018
		95	0.189
7	AHTk253	282	0.127
		286	0.124
		288	0.293
		290	0.299
		292	0.107
		294	0.050
8	C22.279	116	0.050
		118	0.038
		120	0.219
		122	0.006
		124	0.334
		126	0.115
		130	0.118
		132	0.118
9	FH2001	124	0.021
		132	0.098
		140	0.077
		144	0.355
		148	0.006
		152	0.145
		154	0.296
		156	0.003
10	FH2054	152	0.015
		156	0.115
		160	0.467
		164	0.160
		168	0.115
		172	0.080
		176	0.047
11	FH2848	230	0.018
		232	0.030
		234	0.009
		238	0.325
		242	0.615
		246	0.003
12	INRA21	95	0.130
		97	0.790
		99	0.021
		101	0.059
13	INU005	106	0.290
		124	0.441
		126	0.062
		130	0.118
		132	0.089
14	INU030	142	0.036
		144	0.435
		146	0.024
		148	0.041
		150	0.435
		152	0.030
15	INU055	210	0.385
		212	0.281
		214	0.142
		216	0.133
		220	0.050
		222	0.009
16	LEI004	85	0.367
		95	0.494
		97	0.139
17	REN105L03	227	0.092
		229	0.124
		231	0.027
		233	0.015
		235	0.068
		237	0.595
		239	0.065
		241	0.015
18	REN162C04	202	0.086
		204	0.018
		206	0.462
		208	0.003
		210	0.352
		212	0.080
19	REN169D01	202	0.331
		210	0.074
		212	0.192
		216	0.272
		218	0.130
20	REN169O18	162	0.033
		164	0.464
		166	0.166
		168	0.207
		170	0.127
		172	0.003
21	REN247M23	268	0.249
		270	0.530
		272	0.130
		276	0.009
		278	0.083
22	REN54P11	226	0.012
		228	0.163
		230	0.077
		232	0.080
		236	0.018
		238	0.204
		240	0.246
		242	0.201
23	REN64E19	139	0.003
		141	0.006
		145	0.154
		147	0.047
		149	0.364
		151	0.154
		153	0.107
		155	0.133
		157	0.033
24	VGL0760	13	0.562
		14	0.180
		15	0.021
		16	0.027
		17	0.124
		19	0.009
		21.2	0.056
		22.2	0.009
		23.2	0.009
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.266
		17.1	0.009
		18.1	0.198
		19.1	0.456
		20.1	0.053
		21.1	0.012
		22.1	0.003
26	VGL1063	10	0.009
		12	0.015
		13	0.030
		14	0.722
		15	0.092
		16	0.030
		17	0.009
		18	0.086
		19	0.006
		20	0.003
27	VGL1165	15	0.006
		16	0.003
		18	0.021
		21	0.080
		26	0.068
		27	0.101
		28	0.136
		30	0.124
		31	0.450
		32	0.012
28	VGL1828	14	0.033
		15	0.284
		16	0.050
		18	0.027
		19	0.157
		20	0.030
		20.3	0.021
		21	0.308
		22	0.089
		23	0.003
29	VGL2009	9	0.036
		11	0.006
		12	0.127
		13	0.589
		14	0.148
		15	0.092
		16	0.003
30	VGL2409	13	0.009
		13.3	0.021
		14	0.003
		14.3	0.015
		15	0.198
		16	0.364
		17	0.089
		18	0.243
		19	0.059
31	VGL2918	12	0.053
		13	0.157
		14	0.213
		15	0.033
		16	0.006
		17.3	0.024
		18.3	0.071
		19.3	0.349
		20.3	0.009
		21.3	0.015
		22.3	0.071
32	VGL3008	12	0.201
		14	0.183
		15	0.092
		16	0.015
		17	0.053
		18	0.396
		19	0.021
		20	0.038
33	VGL3235	12	0.246
		13	0.287
		14	0.107
		15	0.030
		16	0.009
		17	0.207
		18	0.074
		19	0.041

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	169	7.242	3.467	0.665	0.668	0.006
	SE		0.335	0.209	0.026	0.024	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	169	7.143	3.137	0.655	0.672	0.023
	SE		0.683	0.180	0.018	0.023	0.016

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	169	7	3.228	0.675	0.690	0.023
2	AHT137	169	9	6.488	0.834	0.846	0.014
3	AHTH130	169	9	1.428	0.266	0.300	0.111
4	AHTh171-A	169	6	1.418	0.302	0.295	-0.024
5	AHTh260	169	6	2.765	0.615	0.638	0.036
6	AHTk211	169	5	3.854	0.763	0.741	-0.031
7	AHTk253	169	6	4.533	0.769	0.779	0.013
8	C22.279	169	8	4.876	0.799	0.795	-0.005
9	FH2001	169	8	3.992	0.769	0.749	-0.026
10	FH2054	169	7	3.578	0.675	0.720	0.064
11	FH2848	169	6	2.058	0.497	0.514	0.033
12	INRA21	169	4	1.551	0.349	0.355	0.017
13	INU005	169	5	3.288	0.716	0.696	-0.029
14	INU030	169	6	2.613	0.645	0.617	-0.045
15	INU055	169	6	3.739	0.740	0.733	-0.010
16	LEI004	169	3	2.512	0.604	0.602	-0.003
17	REN105L03	169	8	2.581	0.598	0.612	0.024
18	REN162C04	169	6	2.849	0.651	0.649	-0.003
19	REN169D01	169	5	4.110	0.799	0.757	-0.056
20	REN169O18	169	6	3.297	0.669	0.697	0.040
21	REN247M23	169	5	2.731	0.574	0.634	0.095
22	REN54P11	169	8	5.504	0.793	0.818	0.031
23	REN64E19	169	9	4.713	0.828	0.788	-0.052
24	VGL0760	169	10	2.713	0.633	0.631	-0.003
25	VGL0910	169	8	3.117	0.680	0.679	-0.002
26	VGL1063	169	10	1.855	0.456	0.461	0.012
27	VGL1165	169	10	3.877	0.781	0.742	-0.053
28	VGL1828	169	10	4.686	0.757	0.787	0.037
29	VGL2009	169	7	2.535	0.586	0.606	0.033
30	VGL2409	169	9	4.120	0.734	0.757	0.031
31	VGL2918	169	11	4.838	0.846	0.793	-0.067
32	VGL3008	169	8	4.087	0.769	0.755	-0.018
33	VGL3235	169	8	4.877	0.787	0.795	0.010

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	169	11	3.813	0.692	0.738	0.062
2	DLA I-4ACA	169	7	3.228	0.680	0.690	0.014
3	DLA I-4BCT	169	6	2.166	0.568	0.538	-0.055
4	DLA1131	169	8	3.272	0.698	0.694	-0.005
5	5ACA	169	6	3.272	0.680	0.694	0.020
6	5ACT	169	5	3.363	0.675	0.703	0.040
7	5BCA	169	7	2.844	0.592	0.648	0.087

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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