UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Barbet

DLA class I and II haplotypes identified to date in Barbet

STR Allele Frequencies

Table 1a: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Jul 11, 2019)
Barbet (n=59)
1AHT121 960.017
980.407
1000.076
1020.195
1040.025
1060.220
1080.059
2AHT137 1310.322
1350.042
1370.237
1410.280
1470.119
3AHTH130 1110.229
1190.110
1210.102
1230.237
1270.051
1290.271
4AHTh171-A 2190.110
2210.068
2250.051
2290.076
2330.229
2350.246
2370.034
2410.186
5AHTh260 2380.339
2400.017
2420.288
2460.246
2480.093
2540.017
6AHTk211 870.169
890.068
910.653
950.110
7AHTk253 2840.432
2860.271
2880.186
2900.017
2920.093
8C22.279 1160.136
1180.364
1240.381
1260.119
9FH2001 1320.508
1360.186
1400.102
1440.186
1520.017
10FH2054 1520.127
1560.186
1600.025
1640.203
1680.186
1720.254
1760.017
11FH2848 2300.042
2320.025
2360.220
2380.127
2400.585
12INRA21 910.017
950.381
970.008
990.008
1010.305
1030.203
1050.076
13INU005 1200.042
1240.661
1260.297
14INU030 1440.424
1460.059
1480.119
1500.331
1520.059
1560.008
15INU055 2100.297
2140.424
2160.085
2180.178
2220.017
16LEI004 850.576
950.178
1070.246
17REN105L03 2270.085
2310.322
2330.093
2350.186
2410.314
18REN162C04 2020.441
2040.008
2060.508
2100.042
19REN169D01 2020.025
2120.237
2160.449
2180.119
2220.169
20REN169O18 1620.492
1640.127
1660.008
1700.373
21REN247M23 2680.492
2700.093
2720.415
22REN54P11 2220.093
2260.263
2280.085
2320.093
2340.127
2360.288
2380.051
23REN64E19 1450.610
1470.153
1490.008
1530.229
24VGL0760 120.127
18.20.136
19.20.085
20.20.212
21.20.008
22.20.017
23.20.297
24.20.102
25.20.017
25VGL0910 130.203
18.10.008
19.10.381
20.10.119
21.10.212
220.008
230.051
23.10.008
240.008
26VGL1063 120.042
130.186
140.720
150.008
160.008
180.017
200.017
27VGL1165 150.008
160.169
180.034
190.017
200.008
210.331
220.017
240.093
260.085
280.059
320.178
28VGL1828 140.025
160.068
170.119
180.136
190.237
200.288
220.025
230.102
29VGL2009 90.169
130.093
140.263
150.280
160.195
30VGL2409 140.373
150.051
160.246
170.237
180.093
31VGL2918 130.297
140.220
150.076
17.30.068
18.30.025
19.30.110
20.30.153
21.30.042
22.30.008
32VGL3008 150.093
170.017
180.390
190.432
220.068
33VGL3235 120.025
130.136
140.136
150.068
160.407
170.153
180.076

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL