UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Barbet

DLA class I and II haplotypes identified to date in Barbet

STR Allele Frequencies

Table 1a: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Jan 27, 2020)
Barbet (n=67)
1AHT121 960.015
980.388
1000.067
1020.194
1040.030
1060.231
1080.075
2AHT137 1310.291
1350.037
1370.254
1410.284
1470.134
3AHTH130 1110.246
1190.112
1210.097
1230.231
1270.045
1290.269
4AHTh171-A 2190.104
2210.067
2250.045
2290.075
2330.216
2350.269
2370.030
2410.194
5AHTh260 2380.336
2400.015
2420.276
2460.254
2480.097
2540.022
6AHTk211 870.164
890.075
910.664
950.097
7AHTk253 2840.455
2860.261
2880.179
2900.015
2920.090
8C22.279 1160.127
1180.351
1240.388
1260.127
1300.007
9FH2001 1320.545
1360.172
1400.090
1440.172
1520.022
10FH2054 1520.119
1560.179
1600.030
1640.201
1680.179
1720.276
1760.015
11FH2848 2300.037
2320.030
2360.201
2380.127
2400.604
12INRA21 910.015
950.396
970.007
990.007
1010.291
1030.194
1050.090
13INU005 1200.045
1240.679
1260.276
14INU030 1440.448
1460.052
1480.112
1500.328
1520.052
1560.007
15INU055 2100.276
2140.433
2160.090
2180.179
2220.022
16LEI004 850.567
950.187
1070.246
17REN105L03 2270.082
2310.321
2330.097
2350.179
2410.321
18REN162C04 2020.448
2040.007
2060.507
2100.037
19REN169D01 2020.022
2120.231
2160.470
2180.112
2220.164
20REN169O18 1620.500
1640.112
1660.007
1700.381
21REN247M23 2680.478
2700.097
2720.425
22REN54P11 2220.090
2260.246
2280.082
2320.090
2340.157
2360.284
2380.052
23REN64E19 1450.597
1470.164
1490.022
1530.216
24VGL0760 120.119
18.20.149
19.20.075
20.20.216
21.20.007
22.20.015
23.20.284
24.20.119
25.20.015
25VGL0910 130.194
18.10.007
19.10.381
20.10.134
21.10.209
220.007
230.052
23.10.007
240.007
26VGL1063 120.037
130.179
140.724
150.015
160.015
180.015
200.015
27VGL1165 150.007
160.149
180.037
190.015
200.007
210.351
220.015
240.082
260.075
280.052
320.209
28VGL1828 140.037
160.067
170.119
180.127
190.224
200.313
220.022
230.090
29VGL2009 90.157
130.097
140.254
150.299
160.194
30VGL2409 140.388
150.052
160.231
170.239
180.090
31VGL2918 130.284
140.216
150.082
17.30.060
18.30.022
19.30.112
20.30.179
21.30.037
22.30.007
32VGL3008 150.112
170.015
180.396
190.403
220.075
33VGL3235 120.037
130.127
140.127
150.097
160.381
170.157
180.075

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL