UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Barbet

DLA class I and II haplotypes identified to date in Barbet

STR Allele Frequencies

Table 1a: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Nov 12, 2019)
Barbet (n=65)
1AHT121 960.015
980.400
1000.069
1020.185
1040.023
1060.231
1080.077
2AHT137 1310.300
1350.038
1370.246
1410.285
1470.131
3AHTH130 1110.238
1190.108
1210.100
1230.231
1270.046
1290.277
4AHTh171-A 2190.108
2210.069
2250.046
2290.077
2330.223
2350.246
2370.031
2410.200
5AHTh260 2380.346
2400.015
2420.269
2460.254
2480.092
2540.023
6AHTk211 870.169
890.069
910.662
950.100
7AHTk253 2840.454
2860.262
2880.185
2900.015
2920.085
8C22.279 1160.131
1180.354
1240.385
1260.123
1300.008
9FH2001 1320.538
1360.177
1400.092
1440.177
1520.015
10FH2054 1520.123
1560.185
1600.031
1640.208
1680.177
1720.262
1760.015
11FH2848 2300.038
2320.031
2360.200
2380.131
2400.600
12INRA21 910.015
950.400
970.008
990.008
1010.285
1030.200
1050.085
13INU005 1200.046
1240.669
1260.285
14INU030 1440.454
1460.054
1480.115
1500.315
1520.054
1560.008
15INU055 2100.277
2140.431
2160.092
2180.177
2220.023
16LEI004 850.577
950.177
1070.246
17REN105L03 2270.085
2310.323
2330.100
2350.177
2410.315
18REN162C04 2020.431
2040.008
2060.523
2100.038
19REN169D01 2020.023
2120.231
2160.469
2180.115
2220.162
20REN169O18 1620.500
1640.115
1660.008
1700.377
21REN247M23 2680.485
2700.085
2720.431
22REN54P11 2220.092
2260.254
2280.085
2320.092
2340.146
2360.277
2380.054
23REN64E19 1450.592
1470.169
1490.023
1530.215
24VGL0760 120.123
18.20.146
19.20.077
20.20.223
21.20.008
22.20.015
23.20.277
24.20.115
25.20.015
25VGL0910 130.200
18.10.008
19.10.385
20.10.115
21.10.215
220.008
230.054
23.10.008
240.008
26VGL1063 120.038
130.177
140.723
150.015
160.015
180.015
200.015
27VGL1165 150.008
160.154
180.038
190.015
200.008
210.354
220.015
240.085
260.077
280.054
320.192
28VGL1828 140.031
160.069
170.115
180.131
190.231
200.308
220.023
230.092
29VGL2009 90.162
130.092
140.254
150.300
160.192
30VGL2409 140.385
150.046
160.238
170.246
180.085
31VGL2918 130.285
140.215
150.085
17.30.062
18.30.023
19.30.115
20.30.169
21.30.038
22.30.008
32VGL3008 150.115
170.015
180.392
190.408
220.069
33VGL3235 120.031
130.131
140.123
150.100
160.385
170.154
180.077

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL