UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Havanese

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Feb 22, 2018)
Havanese (n=360)
1AHT121 920.099
940.054
960.001
980.014
1000.054
1020.125
1040.511
1060.053
1080.088
2AHT137 1310.236
1330.067
1370.093
1390.032
1410.168
1430.125
1450.007
1470.182
1490.060
1510.028
1550.003
3AHTH130 1170.032
1190.242
1210.068
1230.031
1250.368
1270.194
1290.036
1310.029
4AHTh171-A 2190.167
2250.238
2270.036
2290.224
2310.249
2330.022
2350.043
2370.019
5AHTh260 2380.093
2420.008
2440.219
2460.328
2480.221
2500.093
2520.008
2540.025
2580.004
6AHTk211 870.504
890.225
910.132
950.125
970.014
7AHTk253 2840.003
2860.069
2880.646
2900.039
2920.243
8C22.279 1160.093
1180.233
1200.006
1220.017
1240.213
1260.118
1300.320
9FH2001 1240.040
1280.010
1320.451
1360.015
1400.010
1440.425
1480.033
1520.015
10FH2054 1480.022
1520.078
1560.253
1600.184
1640.091
1680.167
1720.097
1760.104
1800.001
1840.001
11FH2848 2300.019
2320.279
2340.050
2360.096
2380.065
2400.239
2420.240
2440.008
2460.003
12INRA21 910.104
950.121
970.390
990.049
1010.164
1030.162
1050.010
13INU005 1100.046
1220.007
1240.564
1260.234
1280.011
1320.032
1380.106
14INU030 1440.632
1460.038
1480.032
1500.130
1520.155
1540.013
1560.001
15INU055 2100.364
2120.198
2140.088
2160.171
2180.177
2220.003
16LEI004 830.001
850.617
930.001
950.253
970.003
1010.004
1050.001
1070.109
1090.010
17REN105L03 2270.010
2290.021
2310.229
2330.093
2350.003
2370.168
2390.022
2410.447
2450.007
18REN162C04 2000.052
2020.240
2040.042
2060.348
2080.130
2100.189
19REN169D01 2020.072
2100.171
2120.038
2140.035
2160.431
2180.064
2200.190
20REN169O18 1600.081
1620.235
1640.039
1660.179
1680.192
1700.235
1720.040
21REN247M23 2680.374
2700.150
2720.178
2740.011
2760.246
2780.042
22REN54P11 2220.185
2260.259
2280.118
2320.127
2340.054
2360.060
2380.196
23REN64E19 1390.167
1430.010
1450.107
1470.291
1490.018
1530.391
1550.015
24VGL0760 120.045
130.032
140.079
150.006
18.20.097
19.20.006
20.20.017
21.20.249
22.20.181
23.20.180
24.20.052
25.20.031
26.20.025
27.20.001
25VGL0910 130.007
140.011
16.10.084
170.014
17.10.114
180.019
18.10.061
19.10.134
20.10.050
20.30.004
21.10.322
220.040
22.10.103
230.032
23.10.004
26VGL1063 80.024
120.104
130.038
140.206
150.095
160.007
170.121
180.078
190.040
200.078
210.056
220.148
230.006
27VGL1165 140.001
150.001
160.001
170.021
180.085
190.025
200.015
210.121
220.001
230.050
250.001
260.327
270.064
280.212
290.004
300.008
310.036
320.010
330.014
28VGL1828 150.022
160.315
170.001
180.032
190.043
19.30.007
200.109
210.322
220.047
230.100
240.001
29VGL2009 90.004
100.001
110.135
120.024
130.247
140.260
150.253
160.074
170.001
30VGL2409 140.021
150.063
160.309
170.344
180.205
190.004
200.047
210.007
31VGL2918 120.054
130.279
140.135
150.093
160.011
16.30.007
17.30.017
18.30.092
19.30.025
20.30.018
21.30.068
22.30.195
23.30.006
32VGL3008 130.136
150.082
160.008
170.093
180.155
190.187
200.224
210.097
220.015
230.001
33VGL3235 110.015
120.019
130.109
140.237
150.379
160.049
170.038
180.074
190.078
200.003

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL