UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Havanese

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Jun 22, 2018)
Havanese (n=377)
1AHT121 920.102
940.053
960.001
980.013
1000.057
1020.124
1040.511
1060.051
1080.088
2AHT137 1310.239
1330.064
1370.093
1390.033
1410.170
1430.121
1450.007
1470.187
1490.057
1510.028
1550.003
3AHTH130 1170.031
1190.247
1210.069
1230.029
1250.358
1270.202
1290.035
1310.029
4AHTh171-A 2190.166
2250.239
2270.036
2290.225
2310.249
2330.021
2350.043
2370.021
5AHTh260 2380.094
2420.008
2440.221
2460.326
2480.220
2500.093
2520.008
2540.025
2580.004
6AHTk211 870.507
890.218
910.133
950.130
970.013
7AHTk253 2840.003
2860.068
2880.649
2900.040
2920.241
8C22.279 1160.092
1180.233
1200.005
1220.016
1240.221
1260.117
1300.316
9FH2001 1240.039
1280.009
1320.464
1360.015
1400.009
1440.418
1480.032
1520.015
10FH2054 1480.024
1520.080
1560.255
1600.186
1640.089
1680.162
1720.100
1760.101
1800.001
1840.001
11FH2848 2300.019
2320.277
2340.049
2360.098
2380.065
2400.232
2420.249
2440.008
2460.003
12INRA21 910.105
950.116
970.396
990.049
1010.164
1030.160
1050.011
13INU005 1100.044
1220.007
1240.565
1260.231
1280.011
1320.032
1340.003
1380.108
14INU030 1440.632
1460.036
1480.031
1500.128
1520.160
1540.013
1560.001
15INU055 2100.360
2120.194
2140.097
2160.172
2180.174
2220.003
16LEI004 830.001
850.622
930.001
950.250
970.003
1010.004
1050.001
1070.108
1090.009
17REN105L03 2270.009
2290.023
2310.223
2330.089
2350.003
2370.172
2390.021
2410.454
2450.007
18REN162C04 2000.055
2020.238
2040.041
2060.351
2080.130
2100.185
19REN169D01 2020.074
2100.168
2120.037
2140.040
2160.434
2180.062
2200.184
20REN169O18 1600.077
1620.237
1640.038
1660.182
1680.191
1700.235
1720.040
21REN247M23 2680.383
2700.149
2720.176
2740.011
2760.239
2780.042
22REN54P11 2220.182
2260.261
2280.124
2320.121
2340.053
2360.063
2380.197
23REN64E19 1390.164
1430.009
1450.109
1470.290
1490.017
1530.396
1550.015
24VGL0760 120.043
130.031
140.088
150.005
18.20.100
19.20.005
20.20.016
21.20.247
22.20.180
23.20.174
24.20.055
25.20.029
26.20.027
27.20.001
25VGL0910 130.007
140.012
16.10.085
170.013
17.10.112
180.019
18.10.059
19.10.137
20.10.048
20.30.004
21.10.326
220.039
22.10.105
230.031
23.10.005
26VGL1063 80.027
120.105
130.040
140.205
150.092
160.007
170.117
180.076
190.045
200.074
210.055
220.153
230.005
27VGL1165 140.001
150.001
160.003
170.020
180.086
190.027
200.016
210.120
220.001
230.051
250.001
260.318
270.065
280.219
290.004
300.008
310.035
320.009
330.015
28VGL1828 150.021
160.322
170.001
180.033
190.041
19.30.007
200.106
210.315
220.047
230.105
240.001
29VGL2009 90.004
100.001
110.137
120.023
130.254
140.258
150.250
160.072
170.001
30VGL2409 140.020
150.060
160.319
170.347
180.198
190.004
200.045
210.007
31VGL2918 120.053
130.290
140.134
150.092
160.011
16.30.007
17.30.016
18.30.090
19.30.025
20.30.017
21.30.065
22.30.194
23.30.005
32VGL3008 130.133
150.080
160.008
170.096
180.153
190.190
200.225
210.100
220.015
230.001
33VGL3235 110.015
120.020
130.105
140.238
150.378
160.047
170.036
180.076
190.081
200.005

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL