UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Havanese

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Jan 27, 2020)
Havanese (n=467)
1AHT121 920.114
940.056
960.001
980.015
1000.052
1020.116
1040.511
1060.047
1080.087
1120.002
2AHT137 1310.234
1330.061
1370.093
1390.033
1410.164
1430.125
1450.005
1470.192
1490.066
1510.024
1550.002
3AHTH130 1170.033
1190.253
1210.062
1230.027
1250.354
1270.205
1290.036
1310.028
1330.001
4AHTh171-A 2190.172
2250.245
2270.032
2290.218
2310.249
2330.019
2350.038
2370.028
5AHTh260 2380.101
2420.010
2440.222
2460.307
2480.219
2500.100
2520.006
2540.031
2580.004
6AHTk211 870.503
890.217
910.145
950.121
970.014
7AHTk253 2840.003
2860.073
2880.645
2900.037
2920.242
8C22.279 1160.097
1180.226
1200.005
1220.013
1240.224
1260.119
1280.001
1300.314
9FH2001 1240.038
1280.012
1320.451
1360.013
1400.009
1440.422
1480.044
1520.013
10FH2054 1480.021
1520.083
1560.248
1600.195
1640.082
1680.158
1720.101
1760.111
1800.001
1840.001
11FH2848 2300.016
2320.278
2340.047
2360.097
2380.066
2400.217
2420.268
2440.007
2460.002
12INRA21 910.118
950.101
970.385
990.052
1010.175
1030.160
1050.010
13INU005 1100.043
1220.010
1240.565
1260.227
1280.009
1320.028
1340.004
1380.114
14INU030 1440.634
1460.034
1480.035
1500.127
1520.158
1540.011
1560.001
15INU055 2100.376
2120.195
2140.094
2160.156
2180.177
2220.002
16LEI004 830.001
850.624
930.001
950.256
970.002
1010.003
1050.001
1070.101
1090.010
17REN105L03 2270.007
2290.021
2310.212
2330.088
2350.003
2370.178
2390.018
2410.467
2450.005
18REN162C04 2000.053
2020.226
2040.047
2060.358
2080.134
2100.181
19REN169D01 2020.069
2040.001
2100.181
2120.040
2140.041
2160.422
2180.061
2200.186
20REN169O18 1600.071
1620.234
1640.048
1660.201
1680.185
1700.222
1720.039
21REN247M23 2680.385
2700.141
2720.169
2740.011
2760.255
2780.039
22REN54P11 2220.193
2260.247
2280.121
2320.114
2340.054
2360.061
2380.210
23REN64E19 1390.156
1430.010
1450.101
1470.305
1490.016
1510.002
1530.396
1550.015
24VGL0760 120.039
130.041
140.084
150.004
18.20.097
19.20.004
20.20.023
21.20.254
22.20.170
23.20.177
24.20.050
25.20.031
26.20.026
27.20.001
25VGL0910 130.005
140.014
16.10.083
170.013
17.10.112
180.027
18.10.057
19.10.146
20.10.044
20.30.005
21.10.313
220.036
22.10.108
230.028
23.10.009
26VGL1063 80.026
120.106
130.038
140.204
150.088
160.005
170.103
180.076
190.046
200.069
210.070
220.165
230.004
27VGL1165 140.002
150.001
160.002
170.020
180.089
190.024
200.018
210.116
220.001
230.044
250.001
260.334
270.069
280.203
290.003
300.012
310.031
320.011
330.019
28VGL1828 150.020
160.327
170.002
180.031
190.043
19.30.005
200.101
210.325
220.048
230.095
240.001
29VGL2009 90.004
100.001
110.147
120.020
130.239
140.261
150.252
160.074
170.001
30VGL2409 140.018
150.055
160.319
170.355
180.205
190.003
200.039
210.006
31VGL2918 120.050
130.278
140.135
150.085
160.013
16.30.005
17.30.016
18.30.089
19.30.025
20.30.023
21.30.074
22.30.201
23.30.006
32VGL3008 130.134
140.002
150.079
160.012
170.088
180.159
190.189
200.220
210.102
220.014
230.001
33VGL3235 110.015
120.017
130.107
140.241
150.382
160.043
170.038
180.070
190.083
200.004

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL