Statistics and Breed-wide Allele Frequency - Llewellin Setter

Updated Apr 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Llewellin Setter (n=152)
1008	386 373 289 182	0.049
1016	382 371 277 178	0.030
1026	390 369 289 186	0.053
1028	376 369 291 186	0.003
1030	380 373 293 178	0.020
1045	376 371 277 186	0.003
1054	382 379 277 184	0.092
1077	376 369 291 178	0.609
1134	384 365 291 178	0.118
1142	376 379 277 180	0.016
1201	382 381 277 181	0.003
1212	380 373 293 180	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Llewellin Setter (n=152)
2002	343 327 280	0.030
2005	339 322 280	0.780
2012	345 322 280	0.056
2015	339 327 280	0.003
2018	339 324 284	0.016
2022	339 327 282	0.092
2023	341 323 282	0.013
2035	341 323 280	0.003
2104	341 323 284	0.007

Allele Frequencies

#	Locus Name	Allele	Llewellin Setter (n=153)
1	AHT121	80	0.078
		96	0.327
		98	0.042
		100	0.033
		102	0.304
		106	0.121
		108	0.003
		112	0.026
		114	0.065
2	AHT137	131	0.020
		137	0.046
		145	0.065
		147	0.467
		149	0.389
		151	0.013
3	AHTH130	119	0.275
		121	0.422
		123	0.007
		127	0.275
		129	0.013
		131	0.010
4	AHTh171-A	217	0.013
		219	0.480
		225	0.114
		229	0.003
		233	0.150
		235	0.075
		239	0.003
		241	0.160
5	AHTh260	240	0.098
		244	0.036
		246	0.340
		248	0.523
		254	0.003
6	AHTk211	87	0.154
		89	0.252
		91	0.176
		93	0.033
		95	0.386
7	AHTk253	284	0.369
		286	0.157
		288	0.183
		290	0.111
		292	0.180
8	C22.279	116	0.660
		118	0.013
		124	0.016
		126	0.232
		130	0.078
9	FH2001	124	0.137
		128	0.065
		132	0.255
		136	0.062
		140	0.111
		144	0.176
		148	0.186
		152	0.007
10	FH2054	148	0.059
		152	0.193
		156	0.085
		160	0.144
		164	0.016
		168	0.042
		172	0.108
		176	0.265
		180	0.072
		188	0.016
11	FH2848	238	0.121
		240	0.448
		242	0.408
		244	0.020
		246	0.003
12	INRA21	95	0.007
		97	0.663
		101	0.078
		103	0.180
		105	0.072
13	INU005	110	0.059
		124	0.095
		126	0.209
		128	0.637
14	INU030	144	0.637
		146	0.075
		148	0.072
		150	0.180
		152	0.033
		156	0.003
15	INU055	210	0.458
		212	0.176
		214	0.366
16	LEI004	85	0.660
		95	0.314
		97	0.003
		105	0.023
17	REN105L03	227	0.007
		231	0.085
		233	0.118
		235	0.376
		241	0.415
18	REN162C04	198	0.007
		202	0.840
		204	0.049
		206	0.105
19	REN169D01	202	0.588
		206	0.036
		210	0.023
		212	0.121
		216	0.085
		218	0.114
		220	0.023
		224	0.010
20	REN169O18	156	0.003
		160	0.010
		162	0.023
		164	0.284
		166	0.016
		168	0.605
		170	0.059
21	REN247M23	268	0.248
		270	0.297
		272	0.448
		274	0.007
22	REN54P11	222	0.297
		226	0.314
		232	0.239
		234	0.147
		238	0.003
23	REN64E19	145	0.330
		147	0.239
		149	0.007
		153	0.425
24	VGL0760	12	0.007
		18.2	0.324
		19.2	0.167
		20.2	0.333
		21.2	0.036
		22.2	0.095
		23.2	0.033
		24.2	0.007
25	VGL0910	13	0.029
		14	0.245
		15	0.111
		16	0.007
		17.1	0.016
		18.1	0.023
		19.1	0.098
		20.1	0.033
		21.1	0.261
		22.1	0.131
		23.1	0.007
		24.1	0.039
26	VGL1063	8	0.173
		9	0.085
		13	0.415
		14	0.105
		15	0.016
		18	0.069
		19	0.137
27	VGL1165	14	0.088
		16	0.007
		18	0.013
		19	0.039
		20	0.007
		21	0.163
		22	0.154
		23	0.307
		24	0.007
		27	0.003
		28	0.003
		30	0.196
		31	0.013
28	VGL1828	14	0.042
		15	0.003
		16	0.118
		18	0.003
		19	0.592
		20	0.167
		21	0.003
		22	0.072
29	VGL2009	9	0.003
		11	0.118
		13	0.154
		14	0.722
		15	0.003
30	VGL2409	14	0.003
		15	0.036
		16	0.405
		17	0.448
		18	0.078
		19	0.029
31	VGL2918	12	0.003
		13	0.533
		14	0.219
		15	0.023
		16	0.013
		17.3	0.007
		18.3	0.020
		19.3	0.183
32	VGL3008	14	0.376
		15	0.098
		16	0.016
		18	0.255
		18.2	0.003
		19	0.154
		20	0.092
		21	0.007
33	VGL3235	12	0.310
		13	0.333
		14	0.157
		15	0.095
		16	0.003
		17	0.065
		18	0.033
		19	0.003

Standard genetic assessment based on 33 autosomal STR loci

Llewellin Setter

		N	Na	Ne	Ho	He	F
	Mean	153	6.485	3.249	0.640	0.650	0.014
	SE		0.400	0.213	0.022	0.022	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Llewellin Setter

		N	Na	Ne	Ho	He	F
	Mean	153	5.429	1.695	0.351	0.381	0.074
	SE		0.566	0.143	0.044	0.049	0.014

Standard genetic assessment for individual STR loci

Llewellin Setter

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	153	9	4.390	0.739	0.772	0.044
2	AHT137	153	6	2.656	0.582	0.623	0.067
3	AHTH130	153	6	3.042	0.693	0.671	-0.032
4	AHTh171-A	153	8	3.356	0.693	0.702	0.013
5	AHTh260	153	5	2.501	0.627	0.600	-0.045
6	AHTk211	153	5	3.734	0.719	0.732	0.018
7	AHTk253	153	5	4.182	0.784	0.761	-0.031
8	C22.279	153	5	2.015	0.542	0.504	-0.077
9	FH2001	153	8	5.876	0.771	0.830	0.071
10	FH2054	153	10	6.340	0.863	0.842	-0.024
11	FH2848	153	5	2.616	0.601	0.618	0.026
12	INRA21	153	5	2.067	0.484	0.516	0.063
13	INU005	153	4	2.163	0.542	0.538	-0.009
14	INU030	153	6	2.221	0.536	0.550	0.025
15	INU055	153	3	2.671	0.673	0.626	-0.076
16	LEI004	153	4	1.870	0.405	0.465	0.129
17	REN105L03	153	5	2.989	0.614	0.665	0.077
18	REN162C04	153	4	1.391	0.281	0.281	0.001
19	REN169D01	153	8	2.608	0.582	0.617	0.057
20	REN169O18	153	7	2.219	0.549	0.549	0.001
21	REN247M23	153	4	2.852	0.614	0.649	0.054
22	REN54P11	153	5	3.768	0.660	0.735	0.101
23	REN64E19	153	4	2.887	0.621	0.654	0.050
24	VGL0760	153	8	3.922	0.765	0.745	-0.026
25	VGL0910	153	12	5.820	0.791	0.828	0.045
26	VGL1063	153	7	4.095	0.732	0.756	0.031
27	VGL1165	153	13	5.184	0.837	0.807	-0.037
28	VGL1828	153	8	2.509	0.556	0.601	0.076
29	VGL2009	153	5	1.789	0.490	0.441	-0.112
30	VGL2409	153	6	2.681	0.654	0.627	-0.042
31	VGL2918	153	8	2.730	0.575	0.634	0.092
32	VGL3008	153	8	4.030	0.771	0.752	-0.026
33	VGL3235	153	8	4.058	0.784	0.754	-0.041

Standard genetic assessment for 7 STRs in the DLA region

Llewellin Setter

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	153	7	2.331	0.529	0.571	0.073
2	DLA I-4ACA	153	6	2.116	0.477	0.527	0.095
3	DLA I-4BCT	153	5	1.791	0.399	0.442	0.097
4	DLA1131	153	8	1.641	0.359	0.391	0.080
5	5ACA	153	4	1.267	0.196	0.211	0.070
6	5ACT	153	4	1.417	0.261	0.295	0.112
7	5BCA	153	4	1.304	0.235	0.233	-0.010

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Llewellin Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Llewellin Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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