UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Saint Bernard

DLA class I and II haplotypes identified to date in Saint Bernard

DLA Class I Haplotype Frequencies (Updated Jan 27, 2020)
DLA1 #STR typesSaint Bernard (n=54)
1011376 365 281 1800.074
1017386 373 289 1780.056
1040380 371 277 1860.019
1062382 371 277 1830.065
1068380 373 287 1810.167
1096395 375 277 1820.398
1128384 376 287 1820.009
1160386 369 289 1760.111
1165392 369 281 1820.083
1221380 365 293 1800.009
1240380 369 281 1820.009
DLA Class II Haplotype Frequencies (Updated Jan 27, 2020)
DLA2 #STR typesSaint Bernard (n=54)
2001343 324 2840.009
2005339 322 2800.074
2007351 327 2800.009
2014339 322 2840.056
2021339 324 2680.065
2023341 323 2820.389
2028345 327 2880.019
2053343 324 2800.148
2080339 325 2760.093
2098343 323 2820.120
2124341 322 2840.019

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies

#Locus NameAlleleAllele Frequency (Jan 27, 2020)
Saint Bernard (n=54)
1AHT121 920.074
960.296
1000.083
1040.009
1060.074
1080.417
1100.009
1140.037
2AHT137 1310.713
1350.120
1370.019
1410.028
1470.065
1490.009
1530.046
3AHTH130 1190.028
1210.287
1250.287
1290.148
1310.148
1330.028
1350.009
1390.065
4AHTh171-A 2190.157
2210.176
2290.454
2330.111
2350.102
5AHTh260 2400.269
2440.370
2460.102
2480.250
2540.009
6AHTk211 870.009
890.019
910.296
930.472
950.204
7AHTk253 2860.083
2880.917
8C22.279 1160.287
1180.204
1200.009
1260.500
9FH2001 1320.935
1440.046
1480.019
10FH2054 1480.009
1520.037
1560.185
1600.259
1640.204
1680.213
1720.093
11FH2848 2320.046
2340.417
2360.370
2380.009
2400.009
2420.148
12INRA21 950.389
970.324
1010.287
13INU005 1100.019
1220.222
1240.139
1260.398
1280.009
1300.130
1320.083
14INU030 1440.046
1460.028
1480.213
1500.611
1520.102
15INU055 2100.204
2180.796
16LEI004 850.417
950.370
1070.213
17REN105L03 2310.093
2330.407
2350.093
2370.204
2410.157
2450.046
18REN162C04 2020.111
2040.130
2060.546
2080.194
2100.019
19REN169D01 2020.046
2120.343
2160.139
2180.407
2200.065
20REN169O18 1620.306
1640.093
1680.463
1700.139
21REN247M23 2680.361
2700.324
2720.306
2780.009
22REN54P11 2260.065
2280.574
2320.102
2340.120
2380.139
23REN64E19 1430.139
1450.398
1470.213
1490.028
1530.222
24VGL0760 120.231
130.269
19.20.028
20.20.093
21.20.148
22.20.204
23.20.019
24.20.009
25VGL0910 120.287
17.10.009
18.10.259
19.10.139
20.10.213
21.10.093
26VGL1063 90.111
130.019
140.630
150.028
190.157
200.046
210.009
27VGL1165 130.009
140.074
180.037
190.222
200.009
210.083
230.148
240.009
280.167
290.194
300.046
28VGL1828 150.315
160.306
170.028
190.046
200.157
210.028
230.009
240.065
250.046
29VGL2009 90.148
100.009
130.093
140.685
150.065
30VGL2409 130.037
160.009
170.796
180.157
31VGL2918 130.065
140.407
150.213
160.019
17.30.130
18.30.019
19.30.148
32VGL3008 150.028
160.009
170.713
180.204
18.20.009
190.009
200.028
33VGL3235 130.157
140.528
150.019
160.213
170.083

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL