UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory

Genetic Diversity Testing for Samoyed

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Nov 12, 2019)
Samoyed (n=192)
1AHT121 940.279
960.023
1000.117
1020.326
1060.036
1080.120
1120.034
1140.003
1160.063
2AHT137 1310.055
1330.185
1450.013
1470.240
1510.255
1530.250
1550.003
3AHTH130 1190.195
1210.672
1270.010
1290.122
4AHTh171-A 2190.432
2250.065
2270.133
2290.214
2350.156
5AHTh260 2360.167
2380.005
2420.216
2460.359
2490.005
2500.112
2520.135
6AHTk211 890.339
910.604
930.057
7AHTk253 2840.031
2860.115
2880.146
2900.349
2920.357
2940.003
8C22.279 1160.286
1180.122
1200.076
1220.052
1240.398
1260.005
1340.060
9FH2001 160.003
1320.018
1360.102
1400.026
1440.510
1480.003
1520.086
1560.253
10FH2054 1480.010
1520.003
1560.005
1600.005
1680.630
1720.154
1760.169
1800.023
11FH2848 2320.003
2340.276
2360.216
2370.003
2380.388
2390.003
2400.073
2440.039
12INRA21 950.940
970.044
1010.016
13INU005 1100.156
1220.427
1240.336
1260.026
1320.055
14INU030 1440.182
1460.005
1480.555
1500.258
15INU055 2100.005
2120.005
2140.128
2160.180
2180.682
16LEI004 850.253
950.745
1070.003
17REN105L03 2270.102
2290.167
2310.096
2330.029
2340.003
2350.003
2360.003
2390.057
2410.526
2450.016
18REN162C04 2000.031
2020.182
2040.594
2060.133
2100.060
19REN169D01 2020.440
2080.034
2120.115
2160.135
2200.057
2220.008
2240.206
2260.005
20REN169O18 1620.099
1640.208
1660.565
1680.117
1700.010
21REN247M23 2660.094
2680.354
2700.227
2720.302
2740.005
2760.003
2780.016
22REN54P11 2260.128
2320.581
2340.268
2360.021
2380.003
23REN64E19 1390.448
1430.336
1450.109
1470.107
24VGL0760 120.122
130.174
140.099
18.20.234
19.20.021
20.20.065
21.20.227
22.20.055
26.20.003
25VGL0910 17.10.237
18.10.070
19.10.021
20.10.057
21.10.326
22.10.174
23.10.055
24.10.060
26VGL1063 90.005
110.005
120.591
130.013
140.068
170.289
180.029
27VGL1165 140.174
150.133
170.003
19.30.146
200.003
230.003
240.216
260.320
310.003
28VGL1828 140.008
180.005
190.799
200.174
210.003
220.008
230.003
29VGL2009 90.190
110.180
120.013
130.206
140.385
150.026
30VGL2409 130.036
140.133
150.260
160.117
170.237
180.214
210.003
31VGL2918 90.003
120.010
130.107
140.591
150.247
160.042
32VGL3008 100.003
130.268
140.182
150.083
160.057
170.211
180.042
190.003
200.008
210.029
220.104
230.010
33VGL3235 120.307
130.352
140.273
150.029
160.031
170.008

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL