UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Shiba Inu

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in Shiba Inu

#Locus NameAlleleAllele Frequency (Jan 27, 2020)
Shiba Inu (n=108)
1AHT121 900.005
920.060
960.005
1000.255
1020.269
1040.403
1060.005
2AHT137 1310.125
1330.199
1410.093
1450.144
1490.116
1510.120
1530.204
3AHTH130 1110.009
1190.009
1210.833
1250.009
1290.005
1310.014
1330.042
1350.079
4AHTh171-A 2190.819
2210.005
2250.019
2270.130
2290.009
2330.019
5AHTh260 2360.116
2420.032
2440.579
2460.144
2480.051
2520.079
6AHTk211 870.264
890.190
910.338
930.023
950.185
7AHTk253 2820.116
2860.130
2880.310
2900.301
2920.083
2940.060
8C22.279 1160.051
1180.051
1200.227
1220.009
1240.315
1260.134
1300.106
1320.106
9FH2001 1240.023
1320.111
1400.083
1440.315
1480.005
1520.162
1540.296
1560.005
10FH2054 1520.019
1560.102
1600.523
1640.162
1680.083
1720.074
1760.037
11FH2848 2300.023
2320.037
2340.005
2380.301
2420.634
12INRA21 950.130
970.796
990.023
1010.051
13INU005 1060.292
1240.417
1260.069
1300.120
1320.102
14INU030 1420.037
1440.431
1460.019
1480.042
1500.435
1520.037
15INU055 2100.375
2120.259
2140.144
2160.153
2200.056
2220.014
16LEI004 850.343
950.519
970.139
17REN105L03 2270.116
2290.102
2310.019
2330.019
2350.051
2370.602
2390.079
2410.014
18REN162C04 2020.093
2040.028
2060.449
2080.005
2100.347
2120.079
19REN169D01 2020.329
2100.079
2120.199
2160.264
2180.130
20REN169O18 1620.032
1640.468
1660.139
1680.236
1700.125
21REN247M23 2680.241
2700.551
2720.134
2760.009
2780.065
22REN54P11 2260.019
2280.171
2300.065
2320.079
2360.023
2380.162
2400.269
2420.213
23REN64E19 1390.005
1410.009
1450.148
1470.051
1490.356
1510.157
1530.106
1550.134
1570.032
24VGL0760 130.537
140.204
150.019
160.009
170.144
190.009
21.20.046
22.20.014
23.20.014
24.20.005
25VGL0910 16.10.222
17.10.014
18.10.218
19.10.495
20.10.032
21.10.019
26VGL1063 100.014
120.019
130.037
140.722
150.069
160.037
170.009
180.083
190.009
27VGL1165 150.009
180.023
210.065
260.069
270.102
280.157
300.102
310.458
320.014
28VGL1828 140.032
150.310
160.037
180.023
190.139
200.037
20.30.019
210.306
220.093
230.005
29VGL2009 90.037
110.009
120.125
130.579
140.134
150.111
160.005
30VGL2409 130.009
140.005
14.30.014
150.218
160.366
170.083
180.245
190.060
31VGL2918 120.042
130.139
140.250
150.051
160.009
17.30.023
18.30.074
19.30.338
20.30.005
21.30.009
22.30.060
32VGL3008 120.208
140.162
150.116
160.009
170.051
180.394
190.028
200.032
33VGL3235 120.259
130.278
140.111
150.032
160.005
170.213
180.065
190.037

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL