Updated Mar 28, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Shiba Inu (n=168) |
---|---|---|
1007 | 380 372 281 182 | 0.003 |
1054 | 382 379 277 184 | 0.351 |
1081 | 395 379 289 178 | 0.006 |
1091 | 381 371 277 181 | 0.223 |
1109 | 381 379 291 186 | 0.030 |
1133 | 378 365 287 172 | 0.006 |
1160 | 386 369 289 176 | 0.012 |
1191 | 388 373 260 186 | 0.235 |
1192 | 376 373 281 182 | 0.018 |
1193 | 382 383 277 184 | 0.003 |
1194 | 385 369 291 178 | 0.009 |
1195 | 388 373 289 181 | 0.021 |
1196 | 390 372 291 180 | 0.015 |
1197 | 390 373 289 186 | 0.015 |
1198 | 392 371 277 184 | 0.051 |
1281 | 382 365 277 186 | 0.003 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Shiba Inu (n=168) |
---|---|---|
2001 | 343 324 284 | 0.015 |
2006 | 339 325 280 | 0.003 |
2015 | 339 327 280 | 0.051 |
2018 | 339 324 284 | 0.229 |
2032 | 339 323 280 | 0.006 |
2067 | 343 322 284 | 0.214 |
2071 | 339 322 286 | 0.003 |
2083 | 339 324 282 | 0.006 |
2097 | 343 327 276 | 0.009 |
2098 | 343 323 282 | 0.012 |
2105 | 341 325 276 | 0.015 |
2106 | 341 325 286 | 0.357 |
2107 | 343 322 286 | 0.003 |
2108 | 343 324 294 | 0.021 |
2109 | 345 322 276 | 0.030 |
2110 | 347 325 268 | 0.006 |
2111 | 351 324 276 | 0.018 |
2129 | 343 322 294 | 0.003 |
Allele Frequencies
# | Locus Name | Allele | Shiba Inu (n=168) |
---|---|---|---|
1 | AHT121 | 90 | 0.003 |
92 | 0.068 | ||
96 | 0.003 | ||
100 | 0.256 | ||
102 | 0.244 | ||
104 | 0.423 | ||
106 | 0.003 | ||
2 | AHT137 | 131 | 0.122 |
133 | 0.202 | ||
135 | 0.003 | ||
137 | 0.021 | ||
141 | 0.095 | ||
145 | 0.101 | ||
149 | 0.122 | ||
151 | 0.104 | ||
153 | 0.229 | ||
3 | AHTH130 | 111 | 0.012 |
115 | 0.003 | ||
119 | 0.006 | ||
121 | 0.830 | ||
125 | 0.012 | ||
129 | 0.003 | ||
131 | 0.009 | ||
133 | 0.039 | ||
135 | 0.086 | ||
4 | AHTh171-A | 219 | 0.827 |
221 | 0.003 | ||
225 | 0.012 | ||
227 | 0.137 | ||
229 | 0.006 | ||
233 | 0.015 | ||
5 | AHTh260 | 236 | 0.104 |
242 | 0.030 | ||
244 | 0.560 | ||
246 | 0.167 | ||
248 | 0.063 | ||
252 | 0.077 | ||
6 | AHTk211 | 87 | 0.262 |
89 | 0.185 | ||
91 | 0.348 | ||
93 | 0.018 | ||
95 | 0.188 | ||
7 | AHTk253 | 282 | 0.125 |
286 | 0.125 | ||
288 | 0.295 | ||
290 | 0.301 | ||
292 | 0.107 | ||
294 | 0.048 | ||
8 | C22.279 | 116 | 0.051 |
118 | 0.039 | ||
120 | 0.220 | ||
122 | 0.006 | ||
124 | 0.333 | ||
126 | 0.116 | ||
130 | 0.116 | ||
132 | 0.119 | ||
9 | FH2001 | 124 | 0.021 |
132 | 0.098 | ||
140 | 0.074 | ||
144 | 0.354 | ||
148 | 0.006 | ||
152 | 0.146 | ||
154 | 0.298 | ||
156 | 0.003 | ||
10 | FH2054 | 152 | 0.015 |
156 | 0.116 | ||
160 | 0.467 | ||
164 | 0.161 | ||
168 | 0.113 | ||
172 | 0.080 | ||
176 | 0.048 | ||
11 | FH2848 | 230 | 0.018 |
232 | 0.030 | ||
234 | 0.009 | ||
238 | 0.327 | ||
242 | 0.613 | ||
246 | 0.003 | ||
12 | INRA21 | 95 | 0.131 |
97 | 0.789 | ||
99 | 0.021 | ||
101 | 0.060 | ||
13 | INU005 | 106 | 0.286 |
124 | 0.443 | ||
126 | 0.063 | ||
130 | 0.119 | ||
132 | 0.089 | ||
14 | INU030 | 142 | 0.036 |
144 | 0.435 | ||
146 | 0.024 | ||
148 | 0.042 | ||
150 | 0.435 | ||
152 | 0.030 | ||
15 | INU055 | 210 | 0.387 |
212 | 0.280 | ||
214 | 0.143 | ||
216 | 0.131 | ||
220 | 0.051 | ||
222 | 0.009 | ||
16 | LEI004 | 85 | 0.369 |
95 | 0.491 | ||
97 | 0.140 | ||
17 | REN105L03 | 227 | 0.089 |
229 | 0.122 | ||
231 | 0.027 | ||
233 | 0.015 | ||
235 | 0.068 | ||
237 | 0.598 | ||
239 | 0.065 | ||
241 | 0.015 | ||
18 | REN162C04 | 202 | 0.086 |
204 | 0.018 | ||
206 | 0.458 | ||
208 | 0.003 | ||
210 | 0.354 | ||
212 | 0.080 | ||
19 | REN169D01 | 202 | 0.330 |
210 | 0.074 | ||
212 | 0.193 | ||
216 | 0.271 | ||
218 | 0.131 | ||
20 | REN169O18 | 162 | 0.033 |
164 | 0.461 | ||
166 | 0.167 | ||
168 | 0.208 | ||
170 | 0.128 | ||
172 | 0.003 | ||
21 | REN247M23 | 268 | 0.250 |
270 | 0.530 | ||
272 | 0.128 | ||
276 | 0.009 | ||
278 | 0.083 | ||
22 | REN54P11 | 226 | 0.012 |
228 | 0.161 | ||
230 | 0.077 | ||
232 | 0.080 | ||
236 | 0.018 | ||
238 | 0.205 | ||
240 | 0.247 | ||
242 | 0.199 | ||
23 | REN64E19 | 139 | 0.003 |
141 | 0.006 | ||
145 | 0.155 | ||
147 | 0.048 | ||
149 | 0.366 | ||
151 | 0.152 | ||
153 | 0.107 | ||
155 | 0.131 | ||
157 | 0.033 | ||
24 | VGL0760 | 13 | 0.560 |
14 | 0.182 | ||
15 | 0.021 | ||
16 | 0.027 | ||
17 | 0.125 | ||
19 | 0.009 | ||
21.2 | 0.057 | ||
22.2 | 0.009 | ||
23.2 | 0.009 | ||
24.2 | 0.003 | ||
25 | VGL0910 | 15.1 | 0.003 |
16.1 | 0.268 | ||
17.1 | 0.009 | ||
18.1 | 0.196 | ||
19.1 | 0.455 | ||
20.1 | 0.054 | ||
21.1 | 0.012 | ||
22.1 | 0.003 | ||
26 | VGL1063 | 10 | 0.009 |
12 | 0.015 | ||
13 | 0.030 | ||
14 | 0.720 | ||
15 | 0.092 | ||
16 | 0.030 | ||
17 | 0.009 | ||
18 | 0.086 | ||
19 | 0.006 | ||
20 | 0.003 | ||
27 | VGL1165 | 15 | 0.006 |
16 | 0.003 | ||
18 | 0.021 | ||
21 | 0.080 | ||
26 | 0.068 | ||
27 | 0.098 | ||
28 | 0.137 | ||
30 | 0.125 | ||
31 | 0.449 | ||
32 | 0.012 | ||
28 | VGL1828 | 14 | 0.033 |
15 | 0.286 | ||
16 | 0.048 | ||
18 | 0.027 | ||
19 | 0.158 | ||
20 | 0.030 | ||
20.3 | 0.021 | ||
21 | 0.307 | ||
22 | 0.089 | ||
23 | 0.003 | ||
29 | VGL2009 | 9 | 0.036 |
11 | 0.006 | ||
12 | 0.125 | ||
13 | 0.589 | ||
14 | 0.149 | ||
15 | 0.092 | ||
16 | 0.003 | ||
30 | VGL2409 | 13 | 0.009 |
13.3 | 0.021 | ||
14 | 0.003 | ||
14.3 | 0.012 | ||
15 | 0.199 | ||
16 | 0.366 | ||
17 | 0.086 | ||
18 | 0.244 | ||
19 | 0.060 | ||
31 | VGL2918 | 12 | 0.054 |
13 | 0.158 | ||
14 | 0.214 | ||
15 | 0.033 | ||
16 | 0.006 | ||
17.3 | 0.024 | ||
18.3 | 0.071 | ||
19.3 | 0.351 | ||
20.3 | 0.009 | ||
21.3 | 0.012 | ||
22.3 | 0.068 | ||
32 | VGL3008 | 12 | 0.202 |
14 | 0.185 | ||
15 | 0.092 | ||
16 | 0.015 | ||
17 | 0.054 | ||
18 | 0.393 | ||
19 | 0.021 | ||
20 | 0.039 | ||
33 | VGL3235 | 12 | 0.247 |
13 | 0.286 | ||
14 | 0.107 | ||
15 | 0.030 | ||
16 | 0.009 | ||
17 | 0.205 | ||
18 | 0.074 | ||
19 | 0.042 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 168 | 7.242 | 3.466 | 0.666 | 0.668 | 0.006 | |
SE | 0.335 | 0.208 | 0.026 | 0.024 | 0.007 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 168 | 7.143 | 3.147 | 0.659 | 0.673 | 0.019 | |
SE | 0.683 | 0.181 | 0.018 | 0.022 | 0.016 |
Standard genetic assessment for individual STR loci
Shiba Inu
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 168 | 7 | 3.243 | 0.679 | 0.692 | 0.019 |
2 | AHT137 | 168 | 9 | 6.499 | 0.833 | 0.846 | 0.015 |
3 | AHTH130 | 168 | 9 | 1.431 | 0.268 | 0.301 | 0.111 |
4 | AHTh171-A | 168 | 6 | 1.421 | 0.304 | 0.296 | -0.025 |
5 | AHTh260 | 168 | 6 | 2.759 | 0.613 | 0.638 | 0.038 |
6 | AHTk211 | 168 | 5 | 3.855 | 0.762 | 0.741 | -0.029 |
7 | AHTk253 | 168 | 6 | 4.501 | 0.768 | 0.778 | 0.013 |
8 | C22.279 | 168 | 8 | 4.882 | 0.798 | 0.795 | -0.003 |
9 | FH2001 | 168 | 8 | 3.985 | 0.768 | 0.749 | -0.025 |
10 | FH2054 | 168 | 7 | 3.579 | 0.673 | 0.721 | 0.067 |
11 | FH2848 | 168 | 6 | 2.065 | 0.500 | 0.516 | 0.030 |
12 | INRA21 | 168 | 4 | 1.555 | 0.351 | 0.357 | 0.016 |
13 | INU005 | 168 | 5 | 3.286 | 0.720 | 0.696 | -0.035 |
14 | INU030 | 168 | 6 | 2.617 | 0.643 | 0.618 | -0.040 |
15 | INU055 | 168 | 6 | 3.729 | 0.738 | 0.732 | -0.009 |
16 | LEI004 | 168 | 3 | 2.519 | 0.607 | 0.603 | -0.007 |
17 | REN105L03 | 168 | 8 | 2.558 | 0.595 | 0.609 | 0.023 |
18 | REN162C04 | 168 | 6 | 2.859 | 0.655 | 0.650 | -0.007 |
19 | REN169D01 | 168 | 5 | 4.122 | 0.798 | 0.757 | -0.053 |
20 | REN169O18 | 168 | 6 | 3.317 | 0.673 | 0.699 | 0.037 |
21 | REN247M23 | 168 | 5 | 2.728 | 0.571 | 0.633 | 0.098 |
22 | REN54P11 | 168 | 8 | 5.504 | 0.792 | 0.818 | 0.033 |
23 | REN64E19 | 168 | 9 | 4.695 | 0.827 | 0.787 | -0.051 |
24 | VGL0760 | 168 | 10 | 2.730 | 0.637 | 0.634 | -0.005 |
25 | VGL0910 | 168 | 8 | 3.117 | 0.679 | 0.679 | 0.001 |
26 | VGL1063 | 168 | 10 | 1.863 | 0.458 | 0.463 | 0.010 |
27 | VGL1165 | 168 | 10 | 3.880 | 0.780 | 0.742 | -0.051 |
28 | VGL1828 | 168 | 10 | 4.676 | 0.756 | 0.786 | 0.038 |
29 | VGL2009 | 168 | 7 | 2.533 | 0.583 | 0.605 | 0.036 |
30 | VGL2409 | 168 | 9 | 4.082 | 0.732 | 0.755 | 0.030 |
31 | VGL2918 | 168 | 11 | 4.792 | 0.845 | 0.791 | -0.068 |
32 | VGL3008 | 168 | 8 | 4.117 | 0.774 | 0.757 | -0.022 |
33 | VGL3235 | 168 | 8 | 4.889 | 0.786 | 0.795 | 0.012 |
Standard genetic assessment for 7 STRs in the DLA region
Shiba Inu
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 168 | 11 | 3.830 | 0.696 | 0.739 | 0.057 |
2 | DLA I-4ACA | 168 | 7 | 3.238 | 0.685 | 0.691 | 0.010 |
3 | DLA I-4BCT | 168 | 6 | 2.176 | 0.571 | 0.540 | -0.057 |
4 | DLA1131 | 168 | 8 | 3.285 | 0.702 | 0.696 | -0.010 |
5 | 5ACA | 168 | 6 | 3.281 | 0.685 | 0.695 | 0.015 |
6 | 5ACT | 168 | 5 | 3.375 | 0.679 | 0.704 | 0.036 |
7 | 5BCA | 168 | 7 | 2.845 | 0.595 | 0.649 | 0.082 |