Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Mar 28, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiba Inu (n=168)
1007380 372 281 1820.003
1054382 379 277 1840.351
1081395 379 289 1780.006
1091381 371 277 1810.223
1109381 379 291 1860.030
1133378 365 287 1720.006
1160386 369 289 1760.012
1191388 373 260 1860.235
1192376 373 281 1820.018
1193382 383 277 1840.003
1194385 369 291 1780.009
1195388 373 289 1810.021
1196390 372 291 1800.015
1197390 373 289 1860.015
1198392 371 277 1840.051
1281382 365 277 1860.003

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiba Inu (n=168)
2001343 324 2840.015
2006339 325 2800.003
2015339 327 2800.051
2018339 324 2840.229
2032339 323 2800.006
2067343 322 2840.214
2071339 322 2860.003
2083339 324 2820.006
2097343 327 2760.009
2098343 323 2820.012
2105341 325 2760.015
2106341 325 2860.357
2107343 322 2860.003
2108343 324 2940.021
2109345 322 2760.030
2110347 325 2680.006
2111351 324 2760.018
2129343 322 2940.003

Allele Frequencies

#Locus NameAlleleShiba Inu (n=168)
1AHT121 900.003
920.068
960.003
1000.256
1020.244
1040.423
1060.003
2AHT137 1310.122
1330.202
1350.003
1370.021
1410.095
1450.101
1490.122
1510.104
1530.229
3AHTH130 1110.012
1150.003
1190.006
1210.830
1250.012
1290.003
1310.009
1330.039
1350.086
4AHTh171-A 2190.827
2210.003
2250.012
2270.137
2290.006
2330.015
5AHTh260 2360.104
2420.030
2440.560
2460.167
2480.063
2520.077
6AHTk211 870.262
890.185
910.348
930.018
950.188
7AHTk253 2820.125
2860.125
2880.295
2900.301
2920.107
2940.048
8C22.279 1160.051
1180.039
1200.220
1220.006
1240.333
1260.116
1300.116
1320.119
9FH2001 1240.021
1320.098
1400.074
1440.354
1480.006
1520.146
1540.298
1560.003
10FH2054 1520.015
1560.116
1600.467
1640.161
1680.113
1720.080
1760.048
11FH2848 2300.018
2320.030
2340.009
2380.327
2420.613
2460.003
12INRA21 950.131
970.789
990.021
1010.060
13INU005 1060.286
1240.443
1260.063
1300.119
1320.089
14INU030 1420.036
1440.435
1460.024
1480.042
1500.435
1520.030
15INU055 2100.387
2120.280
2140.143
2160.131
2200.051
2220.009
16LEI004 850.369
950.491
970.140
17REN105L03 2270.089
2290.122
2310.027
2330.015
2350.068
2370.598
2390.065
2410.015
18REN162C04 2020.086
2040.018
2060.458
2080.003
2100.354
2120.080
19REN169D01 2020.330
2100.074
2120.193
2160.271
2180.131
20REN169O18 1620.033
1640.461
1660.167
1680.208
1700.128
1720.003
21REN247M23 2680.250
2700.530
2720.128
2760.009
2780.083
22REN54P11 2260.012
2280.161
2300.077
2320.080
2360.018
2380.205
2400.247
2420.199
23REN64E19 1390.003
1410.006
1450.155
1470.048
1490.366
1510.152
1530.107
1550.131
1570.033
24VGL0760 130.560
140.182
150.021
160.027
170.125
190.009
21.20.057
22.20.009
23.20.009
24.20.003
25VGL0910 15.10.003
16.10.268
17.10.009
18.10.196
19.10.455
20.10.054
21.10.012
22.10.003
26VGL1063 100.009
120.015
130.030
140.720
150.092
160.030
170.009
180.086
190.006
200.003
27VGL1165 150.006
160.003
180.021
210.080
260.068
270.098
280.137
300.125
310.449
320.012
28VGL1828 140.033
150.286
160.048
180.027
190.158
200.030
20.30.021
210.307
220.089
230.003
29VGL2009 90.036
110.006
120.125
130.589
140.149
150.092
160.003
30VGL2409 130.009
13.30.021
140.003
14.30.012
150.199
160.366
170.086
180.244
190.060
31VGL2918 120.054
130.158
140.214
150.033
160.006
17.30.024
18.30.071
19.30.351
20.30.009
21.30.012
22.30.068
32VGL3008 120.202
140.185
150.092
160.015
170.054
180.393
190.021
200.039
33VGL3235 120.247
130.286
140.107
150.030
160.009
170.205
180.074
190.042

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

  NNaNeHoHeF
Mean1687.2423.4660.6660.6680.006
 SE 0.3350.2080.0260.0240.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

  NNaNeHoHeF
Mean1687.1433.1470.6590.6730.019
 SE 0.6830.1810.0180.0220.016

Standard genetic assessment for individual STR loci

Shiba Inu

#LocusNNaNeHoHeF
1AHT12116873.2430.6790.6920.019
2AHT13716896.4990.8330.8460.015
3AHTH13016891.4310.2680.3010.111
4AHTh171-A16861.4210.3040.296-0.025
5AHTh26016862.7590.6130.6380.038
6AHTk21116853.8550.7620.741-0.029
7AHTk25316864.5010.7680.7780.013
8C22.27916884.8820.7980.795-0.003
9FH200116883.9850.7680.749-0.025
10FH205416873.5790.6730.7210.067
11FH284816862.0650.5000.5160.030
12INRA2116841.5550.3510.3570.016
13INU00516853.2860.7200.696-0.035
14INU03016862.6170.6430.618-0.040
15INU05516863.7290.7380.732-0.009
16LEI00416832.5190.6070.603-0.007
17REN105L0316882.5580.5950.6090.023
18REN162C0416862.8590.6550.650-0.007
19REN169D0116854.1220.7980.757-0.053
20REN169O1816863.3170.6730.6990.037
21REN247M2316852.7280.5710.6330.098
22REN54P1116885.5040.7920.8180.033
23REN64E1916894.6950.8270.787-0.051
24VGL0760168102.7300.6370.634-0.005
25VGL091016883.1170.6790.6790.001
26VGL1063168101.8630.4580.4630.010
27VGL1165168103.8800.7800.742-0.051
28VGL1828168104.6760.7560.7860.038
29VGL200916872.5330.5830.6050.036
30VGL240916894.0820.7320.7550.030
31VGL2918168114.7920.8450.791-0.068
32VGL300816884.1170.7740.757-0.022
33VGL323516884.8890.7860.7950.012

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#LocusNNaNeHoHeF
1DLA I-3CCA168113.8300.6960.7390.057
2DLA I-4ACA16873.2380.6850.6910.010
3DLA I-4BCT16862.1760.5710.540-0.057
4DLA113116883.2850.7020.696-0.010
55ACA16863.2810.6850.6950.015
65ACT16853.3750.6790.7040.036
75BCA16872.8450.5950.6490.082