UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Shiba Inu

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in Shiba Inu

#Locus NameAlleleAllele Frequency (Nov 12, 2019)
Shiba Inu (n=107)
1AHT121 900.005
920.061
960.005
1000.252
1020.266
1040.407
1060.005
2AHT137 1310.121
1330.196
1410.093
1450.145
1490.117
1510.121
1530.206
3AHTH130 1110.009
1190.009
1210.836
1250.009
1290.005
1310.014
1330.037
1350.079
4AHTh171-A 2190.818
2210.005
2250.019
2270.131
2290.009
2330.019
5AHTh260 2360.117
2420.028
2440.579
2460.145
2480.051
2520.079
6AHTk211 870.266
890.192
910.332
930.023
950.187
7AHTk253 2820.117
2860.126
2880.313
2900.299
2920.084
2940.061
8C22.279 1160.047
1180.051
1200.224
1220.009
1240.318
1260.136
1300.107
1320.107
9FH2001 1240.023
1320.107
1400.084
1440.313
1480.005
1520.164
1540.299
1560.005
10FH2054 1520.019
1560.103
1600.528
1640.159
1680.084
1720.070
1760.037
11FH2848 2300.023
2320.033
2340.005
2380.304
2420.636
12INRA21 950.126
970.799
990.023
1010.051
13INU005 1060.290
1240.416
1260.070
1300.121
1320.103
14INU030 1420.037
1440.430
1460.019
1480.042
1500.435
1520.037
15INU055 2100.374
2120.262
2140.145
2160.150
2200.056
2220.014
16LEI004 850.341
950.523
970.136
17REN105L03 2270.117
2290.103
2310.019
2330.019
2350.047
2370.603
2390.079
2410.014
18REN162C04 2020.093
2040.028
2060.449
2080.005
2100.346
2120.079
19REN169D01 2020.327
2100.079
2120.196
2160.266
2180.131
20REN169O18 1620.033
1640.472
1660.140
1680.234
1700.121
21REN247M23 2680.243
2700.551
2720.136
2760.009
2780.061
22REN54P11 2260.019
2280.173
2300.065
2320.079
2360.023
2380.159
2400.266
2420.215
23REN64E19 1390.005
1410.009
1450.150
1470.051
1490.355
1510.159
1530.103
1550.136
1570.033
24VGL0760 130.542
140.201
150.019
160.009
170.145
190.005
21.20.047
22.20.014
23.20.014
24.20.005
25VGL0910 16.10.224
17.10.014
18.10.220
19.10.491
20.10.033
21.10.019
26VGL1063 100.014
120.019
130.037
140.720
150.070
160.037
170.009
180.084
190.009
27VGL1165 150.009
180.023
210.065
260.070
270.103
280.159
300.103
310.453
320.014
28VGL1828 140.033
150.308
160.037
180.023
190.140
200.037
20.30.019
210.308
220.089
230.005
29VGL2009 90.037
110.009
120.126
130.579
140.131
150.112
160.005
30VGL2409 130.005
140.005
14.30.014
150.220
160.364
170.084
180.248
190.061
31VGL2918 120.042
130.140
140.252
150.051
160.009
17.30.023
18.30.070
19.30.336
20.30.005
21.30.009
22.30.061
32VGL3008 120.206
140.164
150.117
160.009
170.051
180.393
190.028
200.033
33VGL3235 120.262
130.280
140.112
150.033
160.005
170.206
180.065
190.037

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL