UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Shiba Inu

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in Shiba Inu

#Locus NameAlleleAllele Frequency (Jul 11, 2019)
Shiba Inu (n=103)
1AHT121 900.005
920.063
960.005
1000.248
1020.272
1040.403
1060.005
2AHT137 1310.126
1330.184
1410.097
1450.150
1490.112
1510.126
1530.204
3AHTH130 1110.010
1190.010
1210.845
1250.010
1290.005
1310.015
1330.034
1350.073
4AHTh171-A 2190.820
2210.005
2250.019
2270.131
2290.010
2330.015
5AHTh260 2360.121
2420.029
2440.578
2460.146
2480.053
2520.073
6AHTk211 870.257
890.189
910.335
930.024
950.194
7AHTk253 2820.112
2860.117
2880.320
2900.301
2920.087
2940.063
8C22.279 1160.049
1180.053
1200.214
1220.005
1240.316
1260.141
1300.112
1320.112
9FH2001 1240.024
1320.107
1400.083
1440.320
1480.005
1520.165
1540.291
1560.005
10FH2054 1520.019
1560.102
1600.519
1640.165
1680.087
1720.073
1760.034
11FH2848 2300.019
2320.034
2340.005
2380.311
2420.631
12INRA21 950.131
970.791
990.024
1010.053
13INU005 1060.282
1240.417
1260.073
1300.126
1320.102
14INU030 1420.039
1440.432
1460.019
1480.034
1500.437
1520.039
15INU055 2100.369
2120.262
2140.141
2160.155
2200.058
2220.015
16LEI004 850.354
950.505
970.141
17REN105L03 2270.117
2290.097
2310.019
2330.019
2350.049
2370.607
2390.078
2410.015
18REN162C04 2020.078
2040.029
2060.451
2080.005
2100.354
2120.083
19REN169D01 2020.311
2100.083
2120.199
2160.277
2180.131
20REN169O18 1620.029
1640.476
1660.141
1680.233
1700.121
21REN247M23 2680.243
2700.563
2720.136
2760.005
2780.053
22REN54P11 2260.019
2280.170
2300.068
2320.083
2360.024
2380.165
2400.257
2420.214
23REN64E19 1390.005
1410.010
1450.146
1470.053
1490.359
1510.155
1530.097
1550.141
1570.034
24VGL0760 130.553
140.199
150.015
160.010
170.136
190.005
21.20.049
22.20.015
23.20.015
24.20.005
25VGL0910 16.10.223
17.10.015
18.10.218
19.10.495
20.10.034
21.10.015
26VGL1063 100.015
120.019
130.039
140.728
150.068
160.034
170.010
180.078
190.010
27VGL1165 150.010
180.019
210.063
260.073
270.107
280.155
300.102
310.456
320.015
28VGL1828 140.034
150.301
160.034
180.024
190.146
200.039
20.30.019
210.311
220.087
230.005
29VGL2009 90.039
110.010
120.126
130.583
140.131
150.107
160.005
30VGL2409 130.005
140.005
14.30.015
150.209
160.364
170.087
180.252
190.063
31VGL2918 120.044
130.136
140.248
150.053
160.010
17.30.024
18.30.073
19.30.340
20.30.005
21.30.005
22.30.063
32VGL3008 120.209
140.160
150.117
160.010
170.049
180.398
190.029
200.029
33VGL3235 120.262
130.286
140.112
150.034
160.005
170.214
180.058
190.029

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL