Statistics and Breed-wide Allele Frequency - Shikoku

Updated Jan 9, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=244)
1054	382 379 277 184	0.018
1091	381 371 277 181	0.004
1133	378 365 287 172	0.527
1191	388 373 260 186	0.176
1229	381 369 277 188	0.107
1230	386 369 289 184	0.018
1231	389 371 277 186	0.080
1232	380 365 260 186	0.070

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=244)
2012	345 322 280	0.070
2018	339 324 284	0.176
2056	339 323 286	0.084
2067	343 322 284	0.004
2071	339 322 286	0.018
2077	347 325 286	0.525
2093	347 327 286	0.002
2106	341 325 286	0.018
2122	351 325 286	0.080
2123	339 323 292	0.023

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=244)
1	AHT121	96	0.389
		98	0.102
		100	0.184
		102	0.135
		106	0.156
		108	0.029
		110	0.002
		114	0.002
2	AHT137	131	0.754
		133	0.141
		147	0.059
		151	0.045
3	AHTH130	115	0.791
		117	0.006
		119	0.004
		121	0.176
		125	0.004
		127	0.010
		133	0.008
4	AHTh171-A	219	0.965
		221	0.018
		235	0.002
		237	0.014
5	AHTh260	236	0.377
		246	0.137
		248	0.486
6	AHTk211	89	0.807
		91	0.035
		95	0.158
7	AHTk253	282	0.287
		286	0.201
		288	0.371
		290	0.020
		292	0.098
		294	0.023
8	C22.279	110	0.262
		116	0.414
		118	0.260
		122	0.045
		130	0.018
9	FH2001	132	0.098
		136	0.033
		140	0.277
		144	0.186
		148	0.234
		152	0.014
		154	0.154
		158	0.004
10	FH2054	148	0.004
		152	0.029
		156	0.357
		160	0.121
		164	0.053
		168	0.422
		172	0.014
11	FH2848	230	0.033
		234	0.006
		238	0.869
		240	0.092
12	INRA21	95	0.002
		97	0.465
		99	0.131
		101	0.402
13	INU005	110	0.055
		124	0.672
		126	0.270
		130	0.002
14	INU030	144	0.375
		146	0.373
		152	0.252
15	INU055	210	0.039
		214	0.004
		220	0.348
		222	0.605
		224	0.004
16	LEI004	95	0.371
		97	0.529
		107	0.055
		109	0.045
17	REN105L03	227	0.379
		231	0.131
		233	0.246
		239	0.145
		241	0.098
18	REN162C04	200	0.137
		206	0.850
		210	0.012
19	REN169D01	202	0.059
		212	0.559
		214	0.004
		216	0.377
20	REN169O18	160	0.363
		164	0.564
		168	0.016
		172	0.057
21	REN247M23	268	0.434
		270	0.092
		272	0.473
22	REN54P11	230	0.113
		236	0.244
		238	0.643
23	REN64E19	145	0.080
		147	0.016
		151	0.859
		153	0.045
24	VGL0760	12	0.572
		13	0.100
		14	0.094
		21.2	0.004
		23.2	0.227
		24.2	0.002
25	VGL0910	17.1	0.119
		18.1	0.283
		19.1	0.531
		20.1	0.045
		24.1	0.018
		25.1	0.004
26	VGL1063	13	0.049
		14	0.777
		15	0.154
		16	0.006
		17	0.002
		19	0.010
		20	0.002
27	VGL1165	20	0.742
		22	0.082
		23	0.004
		26	0.014
		28.2	0.158
28	VGL1828	18	0.098
		19	0.500
		20	0.141
		21	0.170
		22	0.090
29	VGL2009	10	0.045
		11	0.178
		13	0.652
		14	0.016
		15	0.109
30	VGL2409	13.3	0.369
		14	0.016
		14.3	0.004
		15	0.227
		15.3	0.023
		16	0.264
		17	0.020
		18	0.076
31	VGL2918	13	0.244
		14	0.465
		15	0.055
		16	0.004
		17.3	0.195
		19.3	0.037
32	VGL3008	11	0.002
		12	0.424
		13	0.053
		15	0.387
		16	0.012
		17	0.051
		18	0.070
33	VGL3235	12	0.074
		15	0.080
		16	0.109
		17	0.012
		18	0.723
		19	0.002

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	244	5.030	2.467	0.532	0.535	0.004
	SE		0.273	0.161	0.031	0.030	0.009

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	244	5.143	2.467	0.561	0.585	0.040
	SE		0.374	0.134	0.024	0.026	0.008

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	244	8	4.176	0.799	0.761	-0.051
2	AHT137	244	4	1.683	0.426	0.406	-0.050
3	AHTH130	244	7	1.522	0.328	0.343	0.044
4	AHTh171-A	244	4	1.073	0.070	0.068	-0.026
5	AHTh260	244	3	2.520	0.611	0.603	-0.012
6	AHTk211	244	3	1.475	0.340	0.322	-0.056
7	AHTk253	244	6	3.693	0.754	0.729	-0.034
8	C22.279	244	5	3.223	0.705	0.690	-0.022
9	FH2001	244	8	4.988	0.775	0.800	0.031
10	FH2054	244	7	3.088	0.602	0.676	0.109
11	FH2848	244	4	1.308	0.246	0.235	-0.044
12	INRA21	244	4	2.532	0.627	0.605	-0.036
13	INU005	244	4	1.894	0.455	0.472	0.036
14	INU030	244	3	2.913	0.615	0.657	0.064
15	INU055	244	5	2.048	0.434	0.512	0.151
16	LEI004	244	4	2.369	0.590	0.578	-0.021
17	REN105L03	244	5	3.965	0.750	0.748	-0.003
18	REN162C04	244	3	1.347	0.242	0.258	0.062
19	REN169D01	244	4	2.180	0.574	0.541	-0.060
20	REN169O18	244	4	2.209	0.557	0.547	-0.018
21	REN247M23	244	3	2.374	0.598	0.579	-0.034
22	REN54P11	244	3	2.057	0.492	0.514	0.043
23	REN64E19	244	4	1.341	0.262	0.254	-0.032
24	VGL0760	244	6	2.515	0.578	0.602	0.041
25	VGL0910	244	6	2.644	0.615	0.622	0.011
26	VGL1063	244	7	1.589	0.385	0.371	-0.039
27	VGL1165	244	5	1.718	0.377	0.418	0.098
28	VGL1828	244	5	3.157	0.721	0.683	-0.056
29	VGL2009	244	5	2.125	0.525	0.529	0.009
30	VGL2409	244	8	3.779	0.709	0.735	0.036
31	VGL2918	244	6	3.143	0.701	0.682	-0.028
32	VGL3008	244	7	2.938	0.656	0.660	0.006
33	VGL3235	244	6	1.828	0.451	0.453	0.005

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	244	7	3.007	0.643	0.667	0.036
2	DLA I-4ACA	244	5	2.441	0.541	0.590	0.084
3	DLA I-4BCT	244	4	2.619	0.598	0.618	0.032
4	DLA1131	244	5	2.524	0.578	0.604	0.043
5	5ACA	244	6	2.634	0.590	0.620	0.049
6	5ACT	244	5	2.278	0.549	0.561	0.021
7	5BCA	244	4	1.763	0.426	0.433	0.015

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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