Updated Apr 22, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Shikoku (n=136) |
---|---|---|
1054 | 382 379 277 184 | 0.015 |
1091 | 381 371 277 181 | 0.007 |
1133 | 378 365 287 172 | 0.566 |
1191 | 388 373 260 186 | 0.169 |
1229 | 381 369 277 188 | 0.092 |
1230 | 386 369 289 184 | 0.018 |
1231 | 389 371 277 186 | 0.099 |
1232 | 380 365 260 186 | 0.033 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Shikoku (n=136) |
---|---|---|
2012 | 345 322 280 | 0.033 |
2018 | 339 324 284 | 0.169 |
2056 | 339 323 286 | 0.070 |
2067 | 343 322 284 | 0.007 |
2071 | 339 322 286 | 0.018 |
2077 | 347 325 286 | 0.566 |
2106 | 341 325 286 | 0.015 |
2122 | 351 325 286 | 0.099 |
2123 | 339 323 292 | 0.022 |
Allele Frequencies
# | Locus Name | Allele | Shikoku (n=136) |
---|---|---|---|
1 | AHT121 | 96 | 0.379 |
98 | 0.077 | ||
100 | 0.202 | ||
102 | 0.147 | ||
106 | 0.165 | ||
108 | 0.029 | ||
2 | AHT137 | 131 | 0.765 |
133 | 0.121 | ||
147 | 0.070 | ||
151 | 0.044 | ||
3 | AHTH130 | 115 | 0.794 |
117 | 0.004 | ||
119 | 0.007 | ||
121 | 0.176 | ||
125 | 0.004 | ||
127 | 0.004 | ||
133 | 0.011 | ||
4 | AHTh171-A | 219 | 0.971 |
221 | 0.015 | ||
237 | 0.015 | ||
5 | AHTh260 | 236 | 0.342 |
246 | 0.132 | ||
248 | 0.526 | ||
6 | AHTk211 | 89 | 0.824 |
91 | 0.026 | ||
95 | 0.151 | ||
7 | AHTk253 | 282 | 0.327 |
286 | 0.140 | ||
288 | 0.382 | ||
290 | 0.033 | ||
292 | 0.103 | ||
294 | 0.015 | ||
8 | C22.279 | 110 | 0.254 |
116 | 0.397 | ||
118 | 0.276 | ||
122 | 0.059 | ||
130 | 0.015 | ||
9 | FH2001 | 132 | 0.129 |
136 | 0.033 | ||
140 | 0.309 | ||
144 | 0.180 | ||
148 | 0.191 | ||
152 | 0.018 | ||
154 | 0.136 | ||
158 | 0.004 | ||
10 | FH2054 | 148 | 0.007 |
152 | 0.029 | ||
156 | 0.327 | ||
160 | 0.114 | ||
164 | 0.037 | ||
168 | 0.474 | ||
172 | 0.011 | ||
11 | FH2848 | 230 | 0.029 |
234 | 0.007 | ||
238 | 0.893 | ||
240 | 0.070 | ||
12 | INRA21 | 95 | 0.004 |
97 | 0.493 | ||
99 | 0.107 | ||
101 | 0.397 | ||
13 | INU005 | 110 | 0.026 |
124 | 0.658 | ||
126 | 0.316 | ||
14 | INU030 | 144 | 0.393 |
146 | 0.331 | ||
152 | 0.276 | ||
15 | INU055 | 210 | 0.044 |
214 | 0.007 | ||
220 | 0.290 | ||
222 | 0.651 | ||
224 | 0.007 | ||
16 | LEI004 | 95 | 0.401 |
97 | 0.555 | ||
107 | 0.026 | ||
109 | 0.018 | ||
17 | REN105L03 | 227 | 0.320 |
231 | 0.147 | ||
233 | 0.283 | ||
239 | 0.140 | ||
241 | 0.110 | ||
18 | REN162C04 | 200 | 0.121 |
206 | 0.868 | ||
210 | 0.011 | ||
19 | REN169D01 | 202 | 0.044 |
212 | 0.563 | ||
214 | 0.007 | ||
216 | 0.386 | ||
20 | REN169O18 | 160 | 0.342 |
164 | 0.574 | ||
168 | 0.022 | ||
172 | 0.063 | ||
21 | REN247M23 | 268 | 0.404 |
270 | 0.114 | ||
272 | 0.482 | ||
22 | REN54P11 | 230 | 0.092 |
236 | 0.243 | ||
238 | 0.665 | ||
23 | REN64E19 | 145 | 0.077 |
147 | 0.011 | ||
151 | 0.857 | ||
153 | 0.055 | ||
24 | VGL0760 | 12 | 0.566 |
13 | 0.085 | ||
14 | 0.096 | ||
21.2 | 0.007 | ||
23.2 | 0.246 | ||
25 | VGL0910 | 17.1 | 0.118 |
18.1 | 0.290 | ||
19.1 | 0.537 | ||
20.1 | 0.029 | ||
24.1 | 0.022 | ||
25.1 | 0.004 | ||
26 | VGL1063 | 13 | 0.044 |
14 | 0.772 | ||
15 | 0.173 | ||
16 | 0.004 | ||
19 | 0.004 | ||
20 | 0.004 | ||
27 | VGL1165 | 20 | 0.717 |
22 | 0.096 | ||
23 | 0.007 | ||
26 | 0.015 | ||
28.2 | 0.165 | ||
28 | VGL1828 | 18 | 0.099 |
19 | 0.544 | ||
20 | 0.110 | ||
21 | 0.169 | ||
22 | 0.077 | ||
29 | VGL2009 | 10 | 0.070 |
11 | 0.199 | ||
13 | 0.629 | ||
14 | 0.018 | ||
15 | 0.085 | ||
30 | VGL2409 | 13.3 | 0.375 |
14 | 0.015 | ||
15 | 0.268 | ||
15.3 | 0.033 | ||
16 | 0.224 | ||
17 | 0.015 | ||
18 | 0.070 | ||
31 | VGL2918 | 13 | 0.254 |
14 | 0.449 | ||
15 | 0.059 | ||
16 | 0.004 | ||
17.3 | 0.199 | ||
19.3 | 0.037 | ||
32 | VGL3008 | 11 | 0.004 |
12 | 0.463 | ||
13 | 0.059 | ||
15 | 0.357 | ||
16 | 0.004 | ||
17 | 0.048 | ||
18 | 0.066 | ||
33 | VGL3235 | 12 | 0.063 |
15 | 0.063 | ||
16 | 0.118 | ||
17 | 0.011 | ||
18 | 0.746 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 136 | 4.788 | 2.432 | 0.528 | 0.527 | -0.003 | |
SE | 0.249 | 0.162 | 0.032 | 0.031 | 0.012 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 136 | 5.000 | 2.285 | 0.491 | 0.551 | 0.108 | |
SE | 0.404 | 0.128 | 0.026 | 0.030 | 0.010 |
Standard genetic assessment for individual STR loci
Shikoku
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 136 | 6 | 4.165 | 0.846 | 0.760 | -0.113 |
2 | AHT137 | 136 | 4 | 1.649 | 0.426 | 0.394 | -0.083 |
3 | AHTH130 | 136 | 7 | 1.511 | 0.324 | 0.338 | 0.043 |
4 | AHTh171-A | 136 | 3 | 1.061 | 0.059 | 0.058 | -0.023 |
5 | AHTh260 | 136 | 3 | 2.434 | 0.603 | 0.589 | -0.023 |
6 | AHTk211 | 136 | 3 | 1.425 | 0.331 | 0.298 | -0.109 |
7 | AHTk253 | 136 | 6 | 3.513 | 0.721 | 0.715 | -0.007 |
8 | C22.279 | 136 | 5 | 3.314 | 0.743 | 0.698 | -0.064 |
9 | FH2001 | 136 | 8 | 4.978 | 0.721 | 0.799 | 0.098 |
10 | FH2054 | 136 | 7 | 2.879 | 0.596 | 0.653 | 0.087 |
11 | FH2848 | 136 | 4 | 1.244 | 0.206 | 0.196 | -0.050 |
12 | INRA21 | 136 | 4 | 2.429 | 0.574 | 0.588 | 0.025 |
13 | INU005 | 136 | 3 | 1.874 | 0.485 | 0.466 | -0.041 |
14 | INU030 | 136 | 3 | 2.939 | 0.640 | 0.660 | 0.030 |
15 | INU055 | 136 | 5 | 1.961 | 0.412 | 0.490 | 0.160 |
16 | LEI004 | 136 | 4 | 2.129 | 0.603 | 0.530 | -0.137 |
17 | REN105L03 | 136 | 5 | 4.242 | 0.779 | 0.764 | -0.020 |
18 | REN162C04 | 136 | 3 | 1.303 | 0.206 | 0.232 | 0.114 |
19 | REN169D01 | 136 | 4 | 2.139 | 0.596 | 0.533 | -0.118 |
20 | REN169O18 | 136 | 4 | 2.221 | 0.551 | 0.550 | -0.003 |
21 | REN247M23 | 136 | 3 | 2.448 | 0.618 | 0.592 | -0.044 |
22 | REN54P11 | 136 | 3 | 1.960 | 0.485 | 0.490 | 0.009 |
23 | REN64E19 | 136 | 4 | 1.346 | 0.257 | 0.257 | -0.001 |
24 | VGL0760 | 136 | 5 | 2.515 | 0.566 | 0.602 | 0.060 |
25 | VGL0910 | 136 | 6 | 2.579 | 0.603 | 0.612 | 0.015 |
26 | VGL1063 | 136 | 6 | 1.593 | 0.375 | 0.372 | -0.008 |
27 | VGL1165 | 136 | 5 | 1.816 | 0.412 | 0.449 | 0.083 |
28 | VGL1828 | 136 | 5 | 2.836 | 0.699 | 0.647 | -0.079 |
29 | VGL2009 | 136 | 5 | 2.237 | 0.522 | 0.553 | 0.056 |
30 | VGL2409 | 136 | 7 | 3.713 | 0.728 | 0.731 | 0.004 |
31 | VGL2918 | 136 | 6 | 3.228 | 0.699 | 0.690 | -0.012 |
32 | VGL3008 | 136 | 7 | 2.842 | 0.632 | 0.648 | 0.024 |
33 | VGL3235 | 136 | 5 | 1.728 | 0.412 | 0.421 | 0.022 |
Standard genetic assessment for 7 STRs in the DLA region
Shikoku
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 136 | 7 | 2.699 | 0.566 | 0.629 | 0.101 |
2 | DLA I-4ACA | 136 | 5 | 2.430 | 0.522 | 0.589 | 0.113 |
3 | DLA I-4BCT | 136 | 4 | 2.455 | 0.544 | 0.593 | 0.082 |
4 | DLA1131 | 136 | 5 | 2.375 | 0.500 | 0.579 | 0.136 |
5 | 5ACA | 136 | 6 | 2.440 | 0.500 | 0.590 | 0.153 |
6 | 5ACT | 136 | 4 | 1.988 | 0.463 | 0.497 | 0.068 |
7 | 5BCA | 136 | 4 | 1.605 | 0.338 | 0.377 | 0.103 |