UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for ISSA Shiloh Shepherd

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies.

#Locus NameAlleleAllele Frequency (Feb 22, 2018)
Shiloh Shepherd, ISSA (n=118)
1AHT121 880.004
980.127
1020.661
1040.123
1080.085
2AHT137 1310.174
1370.814
1390.013
3AHTH130 1230.182
1250.021
1270.678
1310.119
4AHTh171-A 2190.106
2230.364
2250.199
2330.331
5AHTh260 2380.068
2420.780
2460.076
2520.076
6AHTk211 870.140
890.258
910.055
950.547
7AHTk253 2880.869
2920.131
8C22.279 1160.699
1180.013
1240.042
1260.246
9FH2001 1240.123
1320.242
1440.441
1480.195
10FH2054 1480.055
1520.161
1560.305
1600.042
1640.059
1680.314
1760.064
11FH2848 2380.449
2400.445
2420.102
2440.004
12INRA21 930.008
950.102
970.038
990.254
1010.597
13INU005 1100.021
1240.339
1260.640
14INU030 1460.089
1480.076
1500.606
1520.229
15INU055 2100.517
2140.034
2180.415
2200.034
16LEI004 850.585
950.415
17REN105L03 2270.042
2310.148
2330.085
2350.258
2410.466
18REN162C04 2000.136
2040.025
2060.559
2080.021
2120.258
19REN169D01 2120.242
2140.004
2160.754
20REN169O18 1620.360
1640.123
1660.250
1680.267
21REN247M23 2680.364
2700.085
2720.161
2780.390
22REN54P11 2260.576
2340.424
23REN64E19 1390.110
1510.233
1530.119
1550.538
24VGL0760 120.034
130.042
150.008
18.20.025
19.20.292
20.20.178
21.20.148
22.20.246
23.20.025
25VGL0910 130.004
17.10.174
19.10.064
20.10.453
21.10.301
22.10.004
26VGL1063 100.127
120.780
140.093
27VGL1165 140.004
150.148
160.051
170.140
190.013
220.140
250.309
260.034
280.161
28VGL1828 170.021
190.979
29VGL2009 100.008
110.809
120.047
130.004
140.131
30VGL2409 150.640
160.178
170.055
180.127
31VGL2918 130.051
140.174
19.30.148
20.30.203
21.30.394
22.30.030
32VGL3008 100.004
140.051
150.203
160.110
170.220
180.064
200.114
210.225
220.008
33VGL3235 140.547
150.169
160.284

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL