UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Swedish Vallhund

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Nov 12, 2019)
Swedish Vallhund (n=223)
1AHT121 940.137
960.274
980.101
1000.419
1020.067
1060.002
2AHT137 1310.348
1330.027
1350.128
1370.489
1390.004
1470.004
3AHTH130 1190.114
1210.087
1270.056
1290.016
1330.002
1350.724
4AHTh171-A 2210.679
2250.143
2270.016
2290.067
2330.094
5AHTh260 2460.513
2480.323
2500.004
2540.159
6AHTk211 870.404
890.112
910.484
7AHTk253 2820.191
2860.047
2880.350
2900.108
2920.184
2940.121
8C22.279 1160.271
1180.004
1240.668
1300.056
9FH2001 1320.269
1400.002
1440.603
1480.054
1520.072
10FH2054 1480.119
1520.119
1560.668
1600.054
1640.002
1720.036
1760.002
11FH2848 2320.177
2360.040
2380.092
2400.686
2440.004
12INRA21 950.038
970.287
990.074
1010.601
13INU005 1220.047
1240.913
1260.040
14INU030 1440.184
1480.065
1500.695
1520.056
15INU055 2100.253
2120.096
2140.339
2160.312
16LEI004 850.159
950.480
970.052
1050.173
1070.137
17REN105L03 2310.126
2330.157
2350.179
2390.110
2410.428
18REN162C04 2000.269
2020.224
2040.211
2060.294
2100.002
19REN169D01 2020.215
2100.083
2160.141
2180.561
20REN169O18 1620.706
1700.291
1740.002
21REN247M23 2680.845
2720.155
22REN54P11 2260.877
2340.103
2440.020
23REN64E19 1450.061
1470.457
1490.478
1530.004
24VGL0760 120.063
140.105
150.004
20.20.339
21.20.291
22.20.007
23.20.047
24.20.143
25VGL0910 18.10.002
19.10.137
20.10.469
21.10.334
22.10.058
26VGL1063 80.022
120.119
130.195
140.110
150.419
160.007
190.038
200.081
210.009
27VGL1165 180.018
200.437
230.240
240.038
250.148
260.119
28VGL1828 150.002
160.036
170.233
190.596
200.132
29VGL2009 130.132
140.022
150.621
160.222
170.002
30VGL2409 140.197
160.448
170.348
180.004
190.002
31VGL2918 130.179
140.686
150.052
18.30.043
19.30.036
20.30.004
32VGL3008 160.262
170.502
180.170
190.002
200.063
33VGL3235 140.679
150.072
160.011
170.018
180.220

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL