UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Swedish Vallhund

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Jan 27, 2020)
Swedish Vallhund (n=242)
1AHT121 940.128
960.277
980.093
1000.426
1020.074
1060.002
2AHT137 1310.347
1330.025
1350.138
1370.481
1390.004
1470.004
3AHTH130 1190.124
1210.095
1270.058
1290.017
1330.002
1350.705
4AHTh171-A 2210.671
2250.136
2270.017
2290.068
2330.107
5AHTh260 2460.519
2480.322
2500.004
2540.155
6AHTk211 870.413
890.112
910.475
7AHTk253 2820.180
2860.050
2880.362
2900.110
2920.182
2940.118
8C22.279 1160.275
1180.004
1240.667
1300.054
9FH2001 1320.269
1400.004
1440.599
1480.056
1520.072
10FH2054 1480.118
1520.124
1560.671
1600.050
1640.002
1720.033
1760.002
11FH2848 2320.178
2360.048
2380.085
2400.684
2440.006
12INRA21 950.041
970.279
990.070
1010.610
13INU005 1220.056
1240.903
1260.041
14INU030 1440.186
1480.062
1500.700
1520.052
15INU055 2100.258
2120.093
2140.341
2160.308
16LEI004 850.151
950.488
970.064
1050.163
1070.134
17REN105L03 2310.134
2330.159
2350.176
2390.103
2410.428
18REN162C04 2000.256
2020.227
2040.225
2060.285
2100.006
19REN169D01 2020.219
2100.085
2160.132
2180.564
20REN169O18 1620.694
1700.300
1740.006
21REN247M23 2680.847
2720.153
22REN54P11 2260.886
2340.095
2440.019
23REN64E19 1450.058
1470.448
1490.490
1530.004
24VGL0760 120.068
140.103
150.004
20.20.333
21.20.293
22.20.008
23.20.048
24.20.143
25VGL0910 18.10.002
19.10.138
20.10.473
21.10.333
22.10.054
26VGL1063 80.021
120.118
130.188
140.107
150.430
160.006
190.043
200.079
210.008
27VGL1165 180.017
200.440
230.242
240.037
250.147
260.118
28VGL1828 150.002
160.033
170.246
190.591
200.128
29VGL2009 130.136
140.021
150.630
160.211
170.002
30VGL2409 140.194
160.469
170.331
180.004
190.002
31VGL2918 130.180
140.688
150.054
18.30.039
19.30.035
20.30.004
32VGL3008 160.271
170.496
180.167
190.002
200.064
33VGL3235 140.671
150.074
160.012
170.017
180.225

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL