UC Davis School of Veterinary Medicine Veterinary Genetics Laboratory
Genetic Diversity Testing for Swedish Vallhund

STR Allele Frequencies

Table 1: STR alleles from 33 genomic loci and their frequencies in different populations

#Locus NameAlleleAllele Frequency (Jul 11, 2019)
Swedish Vallhund (n=216)
1AHT121 940.134
960.273
980.100
1000.424
1020.067
1060.002
2AHT137 1310.345
1330.028
1350.127
1370.491
1390.005
1470.005
3AHTH130 1190.113
1210.090
1270.053
1290.016
1330.002
1350.725
4AHTh171-A 2210.676
2250.148
2270.016
2290.065
2330.095
5AHTh260 2460.516
2480.319
2500.005
2540.160
6AHTk211 870.403
890.111
910.486
7AHTk253 2820.194
2860.046
2880.350
2900.106
2920.185
2940.118
8C22.279 1160.273
1180.005
1240.667
1300.056
9FH2001 1320.264
1400.002
1440.609
1480.053
1520.072
10FH2054 1480.123
1520.118
1560.671
1600.049
1640.002
1720.035
1760.002
11FH2848 2320.176
2360.042
2380.093
2400.685
2440.005
12INRA21 950.037
970.294
990.072
1010.597
13INU005 1220.049
1240.912
1260.039
14INU030 1440.183
1480.065
1500.694
1520.058
15INU055 2100.257
2120.100
2140.333
2160.310
16LEI004 850.162
950.477
970.051
1050.171
1070.139
17REN105L03 2310.120
2330.160
2350.178
2390.111
2410.431
18REN162C04 2000.271
2020.225
2040.211
2060.292
2100.002
19REN169D01 2020.220
2100.083
2160.141
2180.556
20REN169O18 1620.699
1700.299
1740.002
21REN247M23 2680.843
2720.157
22REN54P11 2260.877
2340.102
2440.021
23REN64E19 1450.063
1470.461
1490.472
1530.005
24VGL0760 120.065
140.106
150.005
20.20.336
21.20.289
22.20.007
23.20.046
24.20.146
25VGL0910 18.10.002
19.10.134
20.10.458
21.10.345
22.10.060
26VGL1063 80.023
120.118
130.197
140.111
150.417
160.007
190.037
200.083
210.007
27VGL1165 180.019
200.440
230.236
240.037
250.150
260.118
28VGL1828 150.002
160.037
170.234
190.595
200.132
29VGL2009 130.137
140.023
150.623
160.215
170.002
30VGL2409 140.199
160.442
170.352
180.005
190.002
31VGL2918 130.176
140.688
150.053
18.30.042
19.30.037
20.30.005
32VGL3008 160.262
170.502
180.176
190.002
200.058
33VGL3235 140.678
150.074
160.009
170.019
180.220

Veterinary Genetics Laboratory, Tel 530-752-2211, Email VGL